Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02038 ATGGAGGACGAGACCTCCGATGCAATGAACCTTGATTTGAATCTGGGCCCAGGCCCAGAGCCCGAAAGTGGGCCCATAAGCAATGAAGGTGTGAACTTGGACGATTGGATAGGAGAGCCTCTTCAGAGAATTAGCGAGGCTGTGAGGTATAGGGCAAGGCAAAGATGGCGATGGCGGCATCTACCTCATCCTCCAGAGCTTCATTTGCCAGATTTTCGTTTGCCACCTGAGGCTCAAAATATCTCGGTGGAATTGAACCAGTTTTTGGCCAATTCTGGTCATGGAAGCGCCTTGCAGGCTGGGGAAGGCAGCGTGGCGGCCGAGGAGAGAATGGAGGAGGCTCCGAAGGCGTGTGAGAATGTGAATGGCGTGGCGGAGAACGAGGGTTCACAGAAGAAGGATGATGTTGAAAAGGGTGGTGGCAATGATGGAGACTTTTTTGATTGTAATATCTGTTTGGACCTGTCTAGGGAACCTGTTGTGACTTGTTGTGGTCATTTGTTTTGTTGGCCGTGCCTGTATCGATGGCTGCATCTGCATTCGGATGCCAAGGAGTGTCCAGTTTGCAAGGGAGAGGTCACTGTTAAGAGTGTTACCCCAATATATGGCCGTGGGAACAATGTCCGTGGTCCTGAGGAGGATTCTGCTATTAAGATCCCTCCTAGGCCCCAAGCAAGGAGGGTTGAGAGTCTGAGGCAAACCCTTCAGAGAAATGCATTTGCACTCCCTGTGGAAGAGATGATTCGGCGTCTCGGAAGCAGAATCGATCTTACTCGCGATTTGGTTCAGCCAAATGAACAAGATGCAGCCCGAGAAACGGCGGAGAGAACCACTTCCTTGCTGAGTAGGTTCTTGACCGCACGAGGGATGAGGAGAGAGCAGCAGAATATAGGGACACCCCCGGGGGATGTAATGGGTTTGGCCCAGAACAATGTTAATGCTGCTGATGCAGGGGATAACCGTAGCAGGGTGCAATCCCATTTGCTTCGAAGAACACAATCACACAGAGCAACGCTTTCAACTCTTTCTTCGGCACTCACTTCTGCTGAAAGGTTGGTTGAGGCGTATTTCCGGAGCAATCCATTAGGTAGGAACCAAGAACAGGCTCCTCCTGTTGATGACAGAGATTCCTTTTCCAGCATTGGTGCTGTTATAAATTCAGAGAGTCAAGTGGACACTGCTGTAGAAATTGATTCCATGGTTTCCTTGTCAACATCCTCTTCTAGGAGGAGGAATGATGCTTCAAGGGTGTCTGATGTCGATAGTGGAGATTCTCGTGCTCCAAGGCGCAGGCGTTTGAACTGA 1305 0.5034 MEDETSDAMNLDLNLGPGPEPESGPISNEGVNLDDWIGEPLQRISEAVRYRARQRWRWRHLPHPPELHLPDFRLPPEAQNISVELNQFLANSGHGSALQAGEGSVAAEERMEEAPKACENVNGVAENEGSQKKDDVEKGGGNDGDFFDCNICLDLSREPVVTCCGHLFCWPCLYRWLHLHSDAKECPVCKGEVTVKSVTPIYGRGNNVRGPEEDSAIKIPPRPQARRVESLRQTLQRNAFALPVEEMIRRLGSRIDLTRDLVQPNEQDAARETAERTTSLLSRFLTARGMRREQQNIGTPPGDVMGLAQNNVNAADAGDNRSRVQSHLLRRTQSHRATLSTLSSALTSAERLVEAYFRSNPLGRNQEQAPPVDDRDSFSSIGAVINSESQVDTAVEIDSMVSLSTSSSRRRNDASRVSDVDSGDSRAPRRRRLN 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02038 434 SUPERFAMILY RING/U-box 145 202 - -
Cca03g02038 434 MobiDBLite consensus disorder prediction 402 434 - -
Cca03g02038 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 206 IPR013083 -
Cca03g02038 434 PANTHER OS01G0830200 PROTEIN 12 434 - -
Cca03g02038 434 MobiDBLite consensus disorder prediction 412 434 - -
Cca03g02038 434 CDD RING-HC_AtRMA_like 147 191 - -
Cca03g02038 434 Pfam Zinc finger, C3HC4 type (RING finger) 149 189 - -
Cca03g02038 434 ProSitePatterns Zinc finger RING-type signature. 164 173 IPR017907 -
Cca03g02038 434 ProSiteProfiles Zinc finger RING-type profile. 149 190 IPR001841 -
Cca03g02038 434 SMART ring_2 149 189 IPR001841 -
Cca03g02038 434 MobiDBLite consensus disorder prediction 1 28 - -
Cca03g02038 434 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 12 434 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02038 Cca-Chr3 40547627 40550020 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02038 1 425 C3H Transcription Factor Family AT3G58030 53.986 1.25e-140 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02038 K10666 - gmx:100811099 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02038 03 40547627 40550020 Cca03g02038 03 40547627 40550020 ECH