Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02028 ATGATGTGCCATGGTTCTTTATTTCAGTATTTCTCTGCCAATAATGCAGAGATCAGTGTGGTTCCACTCGTCAAGCCGCACAACTTCATGCACACAGATGATCACATAGTTTTGGAAGAGGAAAGTGGGCTGAGACAATTGCAACGAGGGAAGTGTTCCCGCCTCGCCATGGGAATGGAGCGAGTGCAGTGTTCATATCACTCTCAGGATGAAGCCTTCAAAATCGGGAAAGAGACGTATCGGGGGCAGCAATACAGCCAGATTTACTTCGCTCGCCTTCATTTGATGAGAACTCTCTTGTATTCAATCGTTCCCCATTGGAAACCTAATTTTCCTGTGTGCACCGTGCTGGGATTGGAAGAAGGCAAGGAGTGTGTCATTGTTGGAACCCTCTATAAACACATGAAGCTCAAACCTTGCATCCTTGATGAGTATTCTAAGGAGAGATCAGTGGTTCCACTTGTCAAGCCGCACAACTTCATGCACCCAGATGATCACCTAGTTTTGGAAGATGAAAGTGGGCGGGTTAAGCTCAGTGGGAATCCCATTTCACCGTCTGAATATGTAACAGGAAATGTGGTTGCTTTACTTGGAAAGGAATCGGGGACTGGTGACTTTTTGGTTCTGGAGGTCCTAGATGCTGGCTTACCACCACAGATAGAATTTCCCATTAAATCAAGGGAAGACAAATATGTTGTTCTAGTATCAGGGTTAAGTGTTGGGAGCAGCAACTCTAATCCTCTTCAGTTTCAGCTTCTCATTGATCATATTACAGGGCATTTAGGAGATGAGAAGGAGCAAAGTATTGCATCACAAATTGCTCATGTTGTCTTTGCTGGAAATTCAGTTGAGATACCTCGCAGACTTCTTAATGGACAGAATTTGGCTTCAAAGGATCTTTCAAAGATGGCTGAGTCAATAAAGGAGCTAGATATTCTGTTGAGTCAGATTGCTGCTAGTTTGCCTTTGGATATCATGCCAGGACCCAGTGACCCTTCTAATTTCTCATTACCCCAGCAGCCATTACATACATGCCTTTTCCCTGGGTCTTCGGCATATAATACTTTCAGATCTTGTACAAATCCTCATTGTTTTGAGCTTGATAATGTCAGGTTTCTTGGGACATCGGGTCAAAATATAGATGATCTTGAGAAGTATTCTGATGCAAAAGATAAACTTGAATTCATGGAAAGAACATTAAGATGGAGGCATGTGGCACCCACTGCTCCTAATACTCTTGGATGTTATCCTTATACTGATAGGGATCCTTTCTTCATTGAGAGCTGTCCTCATGTTTACTTTGTGGGAAATCAAGATAAATTTGAAACTCGTGTCCTAAAGGGATCTGAAGGGCAGTTagtgagactcatttgtgttcctaaattttgtgaatctggagttgctgttatgCTAAATCTGAGGGACCTTGAATGTTACACACTCAGTTTTGGAACTCAGTTCAGCTCATAA 1470 0.4136 MMCHGSLFQYFSANNAEISVVPLVKPHNFMHTDDHIVLEEESGLRQLQRGKCSRLAMGMERVQCSYHSQDEAFKIGKETYRGQQYSQIYFARLHLMRTLLYSIVPHWKPNFPVCTVLGLEEGKECVIVGTLYKHMKLKPCILDEYSKERSVVPLVKPHNFMHPDDHLVLEDESGRVKLSGNPISPSEYVTGNVVALLGKESGTGDFLVLEVLDAGLPPQIEFPIKSREDKYVVLVSGLSVGSSNSNPLQFQLLIDHITGHLGDEKEQSIASQIAHVVFAGNSVEIPRRLLNGQNLASKDLSKMAESIKELDILLSQIAASLPLDIMPGPSDPSNFSLPQQPLHTCLFPGSSAYNTFRSCTNPHCFELDNVRFLGTSGQNIDDLEKYSDAKDKLEFMERTLRWRHVAPTAPNTLGCYPYTDRDPFFIESCPHVYFVGNQDKFETRVLKGSEGQLVRLICVPKFCESGVAVMLNLRDLECYTLSFGTQFSS 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02028 489 Gene3D - 223 488 - -
Cca03g02028 489 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 59 483 IPR024826 -
Cca03g02028 489 Gene3D - 90 214 - -
Cca03g02028 489 Pfam DNA polymerase delta subunit OB-fold domain 84 211 IPR040663 -
Cca03g02028 489 CDD MPP_PolD2_C 231 483 IPR041863 -
Cca03g02028 489 Pfam DNA polymerase alpha/epsilon subunit B 232 442 IPR007185 GO:0003677|GO:0006260
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02028 5 83 Core DNA Replication Machinery Family AT2G42120 38.372 9.20e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02028 K02328 - gmx:100780072 805.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02028 03 40445350 40455812 Cca03g02028 03 40445350 40455812 ECH