Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02023 ATGATAGCGGTGAAACGCGAATTGGTTGACGATGGCGATAGCAGTAGCATCGACAAGCATGACGGCCCCGAACTCCGTGACGCCGATTACCAAACTCCGAAAGGCCGTCGCGGTATTCGTTCTCGCTACCTCGCCGTCGCCAACATGATTCACGATGAAAAGGAGGAAATCGCGAGGCCTGACTCTGACAAGTTTGATTTCATTTTTAATGAAATGGAGAGCTTGCATCAGCTAGTTTCAAAACCAAGAGAACAAGTAGCTGATGCAAAGGCCCTTTTGGACATCACTCAATCCTTGGTAATGTCTGTGAAAAATGTTGCCGTTGGTGGACTAACTCCTTCAAATTTTGTCACCCACATTCTTAAAAAATTCGGAGGTCAAGGTGGATCAGGTAATTGCGCAGACGATTGCAGCCAAAACTCTGTAGCTTGGAAGGATATTGGAGTTGCAGTCTCGCATGTTTTCAGAGAGGGTTGTGGGTGTTGTACAATGATTGGCCCAATGGATGCTAAAATGAAGCAGAGGAAGGTCATTAATCGTCGAAAGTGTGTGAGACCCACTGAATTGGCACGACCCGAAGTGCTTGGTGGAGATTCAGGGGAAGAGAGAACTGAAACTGATAAAAATATGTTAACTATGTTTAACATCTTAAGGATTAATAAAGTCGTGAAACTTGAAAATCTGGTTTTGAATCGTAAATCATTTGCTCAAACGGTGGAGAATTTATTTGCTTTATCTTTTTTAGTCAGAGATGGGCGGGCTGAAATAAAAGTGAATGAGGCTGGATGGCAACTAGTTTCGCCAAGGAATGCTCCAGCTGCAAATGCAATTCTTTCCAGGAATGTTGCTTTCAGCCATTTTGTATTCCGATTTGACTTTAATGATTGGAAGTTGATGGCTCGCTCTGTTGGGGTTGGGGAGGAGCTGATGCCTCATAGGAATAGTCAATCACAGAGTCAGAGTGCAGTATATGCAGGATCTCACGAGACAATGCCGACAGCAACAAAAGTTTTGGGAACTATCCAATAA 1029 0.4393 MIAVKRELVDDGDSSSIDKHDGPELRDADYQTPKGRRGIRSRYLAVANMIHDEKEEIARPDSDKFDFIFNEMESLHQLVSKPREQVADAKALLDITQSLVMSVKNVAVGGLTPSNFVTHILKKFGGQGGSGNCADDCSQNSVAWKDIGVAVSHVFREGCGCCTMIGPMDAKMKQRKVINRRKCVRPTELARPEVLGGDSGEERTETDKNMLTMFNILRINKVVKLENLVLNRKSFAQTVENLFALSFLVRDGRAEIKVNEAGWQLVSPRNAPAANAILSRNVAFSHFVFRFDFNDWKLMARSVGVGEELMPHRNSQSQSQSAVYAGSHETMPTATKVLGTIQ 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02023 342 PANTHER UNCHARACTERIZED 1 330 IPR027786 GO:0005634|GO:0006281|GO:0030915
Cca03g02023 342 Pfam Nse4 C-terminal 223 310 IPR014854 -
Cca03g02023 342 MobiDBLite consensus disorder prediction 1 34 - -
Cca03g02023 342 PANTHER NON-STRUCTURAL MAINTENANCE OF CHROMOSOMES ELEMENT 4 1 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02023 Cca-Chr3 40393268 40397059 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02023 36 315 Non-SMC Element family AT1G51130 53.929 3.52e-104 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02023 K22825 - gmx:100781485 509.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02023 03 40393268 40397059 Cca03g02023 03 40393268 40397059 ECH