Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02020 ATGCTACCTCACAATTTTCAACGCATATCTATTAGTCTGCATAGTACCATCCAACTTCAAATTTTGTTCAATATTGTGCCAATGAACGAGAACAAGGTTGATTGGGGAGGGTTGATTCAACAAAGTCATGGACTAAGTGGTGATTTGAATTCTGAGTTTGGTAATCGTTATTGTCAATATTTTGATATCAGACAGCCTTGGAATATGGGATCATTTACCATGGTTGGAGGAGGAACAGAACAATTACCAAACAATAACATAGGCTCTGTTAAATCATCTGGCACAATTATGAGCCGTTTTGATTCACCAGCTTCTGCCTTTTATGCTGCTGAAAACTGCATGGGGTTTGCCGAATTTGATAGCCAAATTGGTGTTCACTCTTTGAGTTCTCAGTTATGTAAGATTCATGATTTGGAGTTTCCTTTGTATCAATCTCCAAAGGAAAACCTTTTCTTGGATTCAGCAAACCAACCTGACCCCGACTTTGACTTGTCAAACACTCTGCAATCCATTGTGAAATCTCAATTGAATAGTGGTAATCAATGCAGTAGATCTCCTGAAAAGTCCAATAAAATTTCATGTGGGAATTTTCCCAGTTCCAAGATCCTTCCAATTGAACAACAAAAGTTGTTTATTCATGGTGTTATCAGGGGCTCATCAAATCAGGACCATATGATGAGATTCTCTTCTCCAAATGAGAAATTATCTCCAACACTTTCAGGCGGAAGTGTGTCTACTAATGGGGCAGTGGTATCAAGTAAAACACGTATAAGGTGGACCAAGGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGAGGCGCTGAGCAGGCAACACCAAAAGCTATACTAAAGATGATGGATACAGATGGTTTGACTATCTACCATGTCAAAAGTCATTTGCAGAAATATAGAATTGCAAAATTCATTCCAGAGCCCAATTTAGGGAAATCTGACAAAAGAGCCCACACAAAGGATGTGCATCATCTTGATATAAAAACTGGCTTACAAATTAGAGAGGCACTTAAGCTGCAATTAGATGCTCAAAGGTGTCTTCATGAACAACTAGAGATTCAGAGAAAATTACAGTTGCGAATTGAGGAACAAGGCAGGGAACTGAAGAAAATGTTTGACCAGCAGCAAAAGACAAGTAATAACCTCTTGAATACTCAGAATTCAGCCACTGATGAAACAAAAAATAGTCATAAAGATGGTGAGGTTTGTGTTTCTGAAGGGGCCAACAATTCCTTCTTCACTTCCAAGACCTCTCCAAGCCCATAA 1287 0.3893 MLPHNFQRISISLHSTIQLQILFNIVPMNENKVDWGGLIQQSHGLSGDLNSEFGNRYCQYFDIRQPWNMGSFTMVGGGTEQLPNNNIGSVKSSGTIMSRFDSPASAFYAAENCMGFAEFDSQIGVHSLSSQLCKIHDLEFPLYQSPKENLFLDSANQPDPDFDLSNTLQSIVKSQLNSGNQCSRSPEKSNKISCGNFPSSKILPIEQQKLFIHGVIRGSSNQDHMMRFSSPNEKLSPTLSGGSVSTNGAVVSSKTRIRWTKDLHEKFVECVNRLGGAEQATPKAILKMMDTDGLTIYHVKSHLQKYRIAKFIPEPNLGKSDKRAHTKDVHHLDIKTGLQIREALKLQLDAQRCLHEQLEIQRKLQLRIEEQGRELKKMFDQQQKTSNNLLNTQNSATDETKNSHKDGEVCVSEGANNSFFTSKTSPSP 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02020 428 SUPERFAMILY Homeodomain-like 252 308 IPR009057 -
Cca03g02020 428 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 83 199 - -
Cca03g02020 428 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 234 427 - -
Cca03g02020 428 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 254 309 IPR006447 GO:0003677
Cca03g02020 428 Coils Coil 341 361 - -
Cca03g02020 428 MobiDBLite consensus disorder prediction 377 428 - -
Cca03g02020 428 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 234 427 IPR044848 GO:0003700
Cca03g02020 428 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 83 199 IPR044848 GO:0003700
Cca03g02020 428 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 253 311 IPR017930 -
Cca03g02020 428 Pfam Myb-like DNA-binding domain 258 307 IPR001005 -
Cca03g02020 428 Pfam MYB-CC type transfactor, LHEQLE motif 338 385 IPR025756 -
Cca03g02020 428 MobiDBLite consensus disorder prediction 381 398 - -
Cca03g02020 428 Gene3D - 253 312 - -
Cca03g02020 428 MobiDBLite consensus disorder prediction 414 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02020 Cca-Chr3 40335340 40338793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02020 234 382 G2-like Transcription Factor Family AT4G28610 56.291 4.66e-49 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca03g02020 Myb_DNA-binding 9.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02020 - - ccaj:109797364 857.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02020 03 40335340 40338793 Cca03g02020 03 40335340 40338793 ECH