Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02018 ATGGATGATTTGAAGAAGAGAAAGCTAGACGAAGCAGGGAATGGTGAATTTGCTTCCAAGGAAGAGCTTCGCTTCCTCATTGAACCTCTTGCTAAACCACAGCTCGTCGATCTTCTAGCTAAACTAGGGTCCCAATATCCTTCCATTGCAGAAGAAATAAAAAGTATTGCAAGTGCAGATCCTGCCCATCGAAAGCTTTTTGTTCGTGGCTTGGCATGGAATACCACTTCAGAAACTTTGCGTGCTGCATTTCAAGAGCACGGAGAAATTGAGGAAGGAGCTGTGATCTATGATAAAGCAACAGGAAAATCTCGTGGCTATGGATTTATCACTTTCAAAAATATGGAATCAACTCAGCAGGCATTGAGAGCCCCTAGCAAGTTAATCGATGGAAGATTGGCTGTCTGTAATTTAGCTTGTGAGGGTCTAAGCGGAACAAGTAGTGCTCCTGATCTCTCCCTGAGGAAGCTTTATATTGGAAGCTTATCCCCAGAAGTCACTAGTGAAATGCTGCTTAACTATTTTTTGAGGCATGGTGAAATAGAGGAAGGTTCGGTTGCATATGACAAGGATACAAATGAATCACGTGGCTTTGGCTTTGTAACATACAAGACGGCAGAGTCTGCAAAGAAGGCCATAGATGACTTAGAAAAGACTCTTGGGGGAAGGAATATAATTGTAAAATATGCCGATTTCAACAAAGGTAAAACTGGCCAGGCGCCATTTCCTGCTGGAGTGGTTCCAATGGCAGCCTTACCTATGACCCCGGGATATATGCAGCCTGGAAAAGCTCACGTGAGCTCCGGCCCCCCAATCAATTACAGTTACCCCCAAACTGTAGCACCATATTCTGCACCTCCTTATCCAAACCATCTCCCTGCACCCTCTCCTTATTCAACACAAGGGCAGATTCCTTATCCTCCAGTTTCTGCAAAGAAAGACCAACATGGGTTTCCGCCAACTCAACCTGTAGGAATGAACAACTACCCTTATTACTATCCCAAGCAATGA 1011 0.4441 MDDLKKRKLDEAGNGEFASKEELRFLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPAHRKLFVRGLAWNTTSETLRAAFQEHGEIEEGAVIYDKATGKSRGYGFITFKNMESTQQALRAPSKLIDGRLAVCNLACEGLSGTSSAPDLSLRKLYIGSLSPEVTSEMLLNYFLRHGEIEEGSVAYDKDTNESRGFGFVTYKTAESAKKAIDDLEKTLGGRNIIVKYADFNKGKTGQAPFPAGVVPMAALPMTPGYMQPGKAHVSSGPPINYSYPQTVAPYSAPPYPNHLPAPSPYSTQGQIPYPPVSAKKDQHGFPPTQPVGMNNYPYYYPKQ 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02018 336 SMART rrm1_1 65 137 IPR000504 GO:0003723
Cca03g02018 336 SMART rrm1_1 156 228 IPR000504 GO:0003723
Cca03g02018 336 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 232 IPR000504 GO:0003723
Cca03g02018 336 SUPERFAMILY RNA-binding domain, RBD 148 238 IPR035979 GO:0003676
Cca03g02018 336 CDD RRM_RBM24_RBM38_like 64 139 - -
Cca03g02018 336 Gene3D - 55 142 IPR012677 -
Cca03g02018 336 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 132 IPR000504 GO:0003723
Cca03g02018 336 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 223 IPR000504 GO:0003723
Cca03g02018 336 MobiDBLite consensus disorder prediction 287 323 - -
Cca03g02018 336 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 132 IPR000504 GO:0003723
Cca03g02018 336 SUPERFAMILY RNA-binding domain, RBD 57 141 IPR035979 GO:0003676
Cca03g02018 336 Gene3D - 143 245 IPR012677 -
Cca03g02018 336 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 15 336 - -
Cca03g02018 336 PANTHER UBP1-ASSOCIATED PROTEIN 2C-LIKE 15 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02018 Cca-Chr3 40318909 40323343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02018 147 266 C2H2 Transcription Factor Family AT2G19380 32.283 1.17e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02018 K12741 - gmx:100776344 613.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02018 03 40318909 40323343 Cca03g02018 03 40318909 40323343 ECH