Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02017 ATGTTCCAGATTCGAAAACTCAACCTCCTCCACGTCCACCCCTGGCAAAACCCTAGATTCCACACCACCAATACGAAAACAACCCCCTCTTCCCTGAAAGAGGCGAAAGCCGCATTGCTGGAATACCTCCACGCCACGCGGAGCCTCCACTTCCTGGACGCCGACAACATGTGCAAAAACTCCCCTTCCTTCCTCCACGACCTCCTCGccaaaaccctatcccattcccaaacccaaacccttaccctaaccctaaccAAGCGCTCCATCTCGCGCTACCTCCGCTACCACCCCATCAACGAGTTCGAGCCCTTCTTCGAGAGCGTTGGCCTCACCCCTCCCGAGTACGCGCCCCTTCTCCCGCGTGACATGATTTACCTAAACGACGACCCTCTGCTCATGGACAATTACCAAACCCTCTGCAACTACGGCGTTCCCCGCACCAAGATGGGTAAAATTTTCAAACTTGCGCCTCAGGTGTTTCGTTACGGACCTAGGGTTTTGAGCTCCAAGCTAAGGGAGTACGAAAACCTCGGTGTTGGGCCGGGGACGCTGGCGGGTGTGGTTGCTTGTAGTCCCTGTGTTTTGGTTGGGGGTGTTGATTTTGAGTTTGTTAAGGTTGTGGAGAAGTTGAAGGGGCTTGTTGGGAAGGATGGTGATTGGATTGGGAGCAATTTTATTGATGAGGGTTGTTGTAATTGGGGGGTTATGCTTCGGGTTTTGTGCTTGCTTGGTAGGGTTTACAGTGAGGAGCAGTTGGGTGATTTAATCGTTCGGCATCCTTGTTTGATTTTCGAGGAGTCTGGAGGATGTGTGTTGTCCCTTGTTGTTTTTTTGTTCAAATTGGGATTCTCCATGGACCAGGTTTCACGGATGTTTATTGAGTTTCCGGAGATCCGGGTTGGGAAATTTTTGTCGAACTTGAAGCAGTGTTTTCTGTTCTTGACTGAGATTGAGATGGAGGCTTCGGAGATTGAGAGGATTTTTCACTCTCACTGCTTGGTGTTGGGTTCCTTCACTTTGAAGAAAACGATTACTTTGCTGACTTTCTTGAATGTTGGCAAGAAGCGGCTGTGTAGAACTGTGAGTGATGATCCTCTGCTGATGAAAAGTTGGGCTTTGGGGAAAAGGATCGAGCCGTTGGTGAACTCGTATTTGGAGTACGAATCGAAGGAATTGAAGAAGAAGTTCATGCTGAAGTTGGGGTATGTGGAGAACTCAAAGAAAATGAACGAGGCGATTAAGTTGTTTAGAGGTAAGGGAGCTGAGCTTGAGGAGAGGCTTGATTTTATTGTTAGAGCTGGGTTGGATTATGAGGTTGTCTGTGAGATGATTAGGAATTCGCCTCGGATTCTTAGTCAGACCACAGATAGGATCAACAAGAAGATTGAGTTTCTTGTGAATGAAGGATATTCTATATCCGATTTGGCGAGTTTCCCTTCCTTTCTTTCGTATTCGCCTCGAAGAGTTAAGCTTAGGTTTTCAATGTATAATTGGCTCAAAGAGCAGGGAGTTATAGAGGCGGGGTTTGCTTTGAGCACTATCATTGCTTGCTCTGAGAAAGCGTTTGAGCGGCTGTATGTTAAGCGCCATCCATCTGGCCTTCAAGTTTGGCAGGATTTAAAGGCACAAATTTCTTCTGACATCTGA 1650 0.4624 MFQIRKLNLLHVHPWQNPRFHTTNTKTTPSSLKEAKAALLEYLHATRSLHFLDADNMCKNSPSFLHDLLAKTLSHSQTQTLTLTLTKRSISRYLRYHPINEFEPFFESVGLTPPEYAPLLPRDMIYLNDDPLLMDNYQTLCNYGVPRTKMGKIFKLAPQVFRYGPRVLSSKLREYENLGVGPGTLAGVVACSPCVLVGGVDFEFVKVVEKLKGLVGKDGDWIGSNFIDEGCCNWGVMLRVLCLLGRVYSEEQLGDLIVRHPCLIFEESGGCVLSLVVFLFKLGFSMDQVSRMFIEFPEIRVGKFLSNLKQCFLFLTEIEMEASEIERIFHSHCLVLGSFTLKKTITLLTFLNVGKKRLCRTVSDDPLLMKSWALGKRIEPLVNSYLEYESKELKKKFMLKLGYVENSKKMNEAIKLFRGKGAELEERLDFIVRAGLDYEVVCEMIRNSPRILSQTTDRINKKIEFLVNEGYSISDLASFPSFLSYSPRRVKLRFSMYNWLKEQGVIEAGFALSTIIACSEKAFERLYVKRHPSGLQVWQDLKAQISSDI 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02017 549 SMART mt_12 151 181 IPR003690 GO:0003690|GO:0006355
Cca03g02017 549 SMART mt_12 290 321 IPR003690 GO:0003690|GO:0006355
Cca03g02017 549 SMART mt_12 442 472 IPR003690 GO:0003690|GO:0006355
Cca03g02017 549 SMART mt_12 473 506 IPR003690 GO:0003690|GO:0006355
Cca03g02017 549 SMART mt_12 186 218 IPR003690 GO:0003690|GO:0006355
Cca03g02017 549 Gene3D Transcription termination factor 3, mitochondrial 273 541 IPR038538 -
Cca03g02017 549 Gene3D Transcription termination factor 3, mitochondrial 60 218 IPR038538 -
Cca03g02017 549 Pfam mTERF 410 524 IPR003690 GO:0003690|GO:0006355
Cca03g02017 549 Pfam mTERF 249 385 IPR003690 GO:0003690|GO:0006355
Cca03g02017 549 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 21 542 - -
Cca03g02017 549 PANTHER CGI-12 PROTEIN-RELATED 21 542 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02017 Cca-Chr3 40315415 40317974 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Cca03g02017 mTERF 5.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02017 - - gmx:100807690 786.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02017 03 40315415 40317974 Cca03g02017 03 40315415 40317974 ECH