Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02015 ATGGCTTCTGCCTCCTCTGAGTCTCTCAACGGTTTGAAATTTGGCAAAAAAATCTATTTTGAGGATGTGGGTCACTCTACTAGTACTCCACCCtcttctcttgcttctgctgttgctactactgcttcttcctcttcttcAAGGAAAGGAAGAGGTGGGTCTGTTCAACCAGCTCAGCCTCCCAGGTGTCAAGTTGAAGGGTGCAAGGTAGATCTGAGTGATGCAAAAGCTTACTATTCTAGACACAAGGTCTGTGGCATGCACTCCAAATCCCCCATTGTCATTGTTGCTAGCCTTCAACAAAGGTTTTGTCAACAGTGTAGCAGATTTCATCAGCTTCCTGAGTTTGATCAAGGAAAAAGAAGTTGCCGCAGACGACTAGCTGGCCATAATGAACGGAGGAGAAAGCCCCCACCCAGCTCCCTCTTAACCTCTCGCTATGCCAGACTTTCTTCATCTGCTTTTGATAACAGTGGCAGAGGTGGCAACTTTCTGATGGAATTGTCTTCATACCCAAAGCTTAGTCTGAGAAGTCCACTTCCAACTCCTGGATCATCTGAGCTAGCTCATGGAAATCAAACCTCAACAATCAGCTGGCAGGAAAACTCAGAGACACCATCTGATCTTTTCTTGCAAGGTTCGGTGGGTGGAACCAGCTTTGCTGGTCCTGAACATCCTCCAGGGGAAAGCTACACTGGGGTCACTGACTCAAGCTGTGCTCTCTCTCTTCTGTCAAGTCAAACATGGGGTTCTAGAAACACTGCACCAAGTCTTGGGTTAAATAGCATGATAAATTTCAATGAGACACCCATGACACAACTTGCTGCATCATCTCATGGTGCATCAATCCATCAACTCCCAAATAATTCGTGGTGTTTCAAGGGCATTGATACCGAGGTTGTCCCTGATCTTGGTCTAGGTCAAATTTCACAGCCCCTCAATAGCCAACTTCCTGGTGAGCTGGATCTGTCACAACAGGGCAGGAGGCATTACGTGGATCTAGAACAGTCCAGGGCATATGAATCTGCTCATTGGAAAATGGTTTGTCACTTCCTCTACGTGCATCTTAACCTCTTTGTCTTCTCTTCAATTTTGATTTCTCAGGGTTTGGCGTTAACTCATCCAACTGAAGTGTCAGCTCTCCAGGATCTATACAATGCCTTGAACTATCCACCTATGCTCAAAGGATGGAATGGTAGCGATCCTTGTGGGGAGTCCTGGACAGGAGTTGCTTGTTCTGGGCCATCAGTTATACAATTAAAACTTCAAGGATTAAACCTCACTGGGTATCTTGGAAGCCTCTTGTATAATCTACGTAATTTGAAGCAACTTGATATCAGTTCGAATAACATAGTGGGTGAAATGCCTTTCGGTTTACCCCCCAATGTCACACATATGAATTTAAGCCACAATTTACTACATGGACCCATTGGTGATGTATTTACTGGTTTAGATCATCTCAAAGAAATGGACCTTTCATATAATAATTTCTCTGGAGATCTACCTAGTTCATTTGGTTCCTTAAGAAACCTTGCTAAATTGTTCCTGCAAAATAACAGATTCACTGGATCAGTCGCTTACTTGGCTGAACTTCCACTAACAGATTTGAATATTCAAGATAATATGTTTAGCGGCATTCTTCCACAGCATTTTCAATCCATACTGAATTTATGGATTGGAGAGAATAAATTCCATGTGTCAGACAACTCTCCTCCCTGGACTTTTCCTCTGGAAACTGTATCAGTTGAGCATAACACTAGTAGCCCACCCACAACTCGGGCAAATGCCATAAAGAATTATTCTCCTCCCAGAGTAAGTGAGGCTCTTCCCATGGTAAGTGAGGCTCCTCCCAGAGTAAGGGAGGCTCCTCCCAGAGTAAATGAGCACAAGGAGAAACGTGTAAGTCCTGGAGGAATAGCATTTATGGTTGGTTCAGGAACACTAATGGTAACAGGGTTAGCACTCTTTGTTGCAATCCGTTTGAATAAACTTCGTGTACAGAAATCGAACTCGAAGAGCACAGAAAGCAACCAAGGCTCATTGCATTCTCATCCGTCCAGTGCAACCATAGGAGTCTCTTCTACCGCACTAGAGGAGAGCCCTCAACACCCCACCTTTAATTATGCATCCCTCGTGGGCCCTCCTGTGGGATTGCCTTCCCTGAACCATAACAATACAGAGGAACCATCAAGAAGAAGTTTTTTCAAAAGAGCCAGATCCAGTGGAAGGACGAAAATTTACACAGTAGCGGAGCTTCAGTTGGCTACTAATTGCTTCAATGAAGCCAACATTCTGGGAGAAGGATCTCTTGGTCCTGTTTATAGAGCTAAATTTCCCGATGACAAAATTTTGGCCGTCAAGAAGATAAACATGGCGGGCCTGTCGTTCAGAGAAGAGGAGAAGTTCATGGATGTCATTTGCACAGTTTCCCGACTGAACCATCCCAACATCGTAGCACTCAGTGGTTACTGTTTGGAGCAAGGAAAGCATCTTCTTGTTTACAATTACGTTGGAAATTTCACTCTAAACGATGCTCTTCACGATGAGGCGTACAAACCTCTGTCATGGCTCCACCGTCTCCGGATTGCTCTCGGGGTTGCTCAAGCCCTAGACTATTTGCACTCAGTGTTGTGTCCTCCTGTGGCTCACGGCAACTTGAAGGCTGCCAATGTCCTACTGGATGAAAATTTGATGCCTCGTGTTTGTGACTGTAGCTTGGCTATTTTGAGACCACTGACTATCAATCAAGTCGAAATTCCGGCTAATGAGTTCAACATTGGAGAGATAGGGTACGTTGCCCCAGATCATGGGCAACCAGGAAGCAGCAGCAGAAAGAGAGACGTTTTTGCCTTTGGGGTACTGCTTCTGGAATTGTTAACAGGAAGGAAACCTTATGACGGAGCGAGGCCAAGGGAGGAGCAATATCTGGTGAAATGGGCTCCACCGATGCTTCCTTATAGAGCGAGTTTGGAACAGGTGGTAGATCCCCGCATGAAGAGAACATTTTCACCGAAGGCTCTTTCTCGTTATGCTGATATCATCACCCTCTGTATACAGCCTGTAAGGCAACTCCGTCCTCCAATGTCCGAAATTGTGAAGTCTCTTGAATCTCTATACCAAAAGTTCAACATTGACAAGAGCGATGTAGCAGATGGAAAAAGAGAGAAAAAAAATAGTTGCAGGCAAGTAAGTAGCAACGCCGAATCGAGGGTGTTCAGAGTTTACACTAACGAGTGCCCATTTTCTCTTCTCAAATTGTCAGAGTGTGCAGAGAATATCATGGTGGACAGAGCAGAACTTAGGTACTTGGAGGATGAGGATTCATCACTCATGAAAACTATTAAGGGTGCAACGACTGGTTTAGTTGCTGGCACTATCTGGGGTACTGTAGTTGCCACCTGGTATGATGTCCCTCGTGTTGAGAGAAGTGTTGCTCTTCCAGGGCTGATAAGGACTTTCAAGATGATGGGTAATTATGGTTTGACCTTTGCTGCCATAGGAGGAGTCTACATAGGTGTAGAGCAGTTGGTGCAGAACTATAGGATGAAGAGGGATTTTGTCAATGGAGCTGTTGGTGGATTTGTTGCTGGTGCAACTATTATAGGTTACAAAGGAAGGAGCATCAAAACTGCACTTTCTGCTGGGTCAGCATTGGCATTCACTTCTGCATATATTGATtacggtgatcagagattaaaacatgatgatgggaaggagtatgctgcttacaccacaaagaaaagaagcagcacTGATGCATAA 3762 0.4341 MASASSESLNGLKFGKKIYFEDVGHSTSTPPSSLASAVATTASSSSSRKGRGGSVQPAQPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPIVIVASLQQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPPPSSLLTSRYARLSSSAFDNSGRGGNFLMELSSYPKLSLRSPLPTPGSSELAHGNQTSTISWQENSETPSDLFLQGSVGGTSFAGPEHPPGESYTGVTDSSCALSLLSSQTWGSRNTAPSLGLNSMINFNETPMTQLAASSHGASIHQLPNNSWCFKGIDTEVVPDLGLGQISQPLNSQLPGELDLSQQGRRHYVDLEQSRAYESAHWKMVCHFLYVHLNLFVFSSILISQGLALTHPTEVSALQDLYNALNYPPMLKGWNGSDPCGESWTGVACSGPSVIQLKLQGLNLTGYLGSLLYNLRNLKQLDISSNNIVGEMPFGLPPNVTHMNLSHNLLHGPIGDVFTGLDHLKEMDLSYNNFSGDLPSSFGSLRNLAKLFLQNNRFTGSVAYLAELPLTDLNIQDNMFSGILPQHFQSILNLWIGENKFHVSDNSPPWTFPLETVSVEHNTSSPPTTRANAIKNYSPPRVSEALPMVSEAPPRVREAPPRVNEHKEKRVSPGGIAFMVGSGTLMVTGLALFVAIRLNKLRVQKSNSKSTESNQGSLHSHPSSATIGVSSTALEESPQHPTFNYASLVGPPVGLPSLNHNNTEEPSRRSFFKRARSSGRTKIYTVAELQLATNCFNEANILGEGSLGPVYRAKFPDDKILAVKKINMAGLSFREEEKFMDVICTVSRLNHPNIVALSGYCLEQGKHLLVYNYVGNFTLNDALHDEAYKPLSWLHRLRIALGVAQALDYLHSVLCPPVAHGNLKAANVLLDENLMPRVCDCSLAILRPLTINQVEIPANEFNIGEIGYVAPDHGQPGSSSRKRDVFAFGVLLLELLTGRKPYDGARPREEQYLVKWAPPMLPYRASLEQVVDPRMKRTFSPKALSRYADIITLCIQPVRQLRPPMSEIVKSLESLYQKFNIDKSDVADGKREKKNSCRQVSSNAESRVFRVYTNECPFSLLKLSECAENIMVDRAELRYLEDEDSSLMKTIKGATTGLVAGTIWGTVVATWYDVPRVERSVALPGLIRTFKMMGNYGLTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFVAGATIIGYKGRSIKTALSAGSALAFTSAYIDYGDQRLKHDDGKEYAAYTTKKRSSTDA 1253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02015 1253 Pfam Leucine rich repeat N-terminal domain 375 413 IPR013210 -
Cca03g02015 1253 SUPERFAMILY L domain-like 373 566 - -
Cca03g02015 1253 Pfam Leucine rich repeat 461 521 IPR001611 GO:0005515
Cca03g02015 1253 MobiDBLite consensus disorder prediction 25 62 - -
Cca03g02015 1253 ProSiteProfiles Zinc finger SBP-type profile. 60 137 IPR004333 GO:0003677
Cca03g02015 1253 Pfam Tim17/Tim22/Tim23/Pmp24 family 1112 1220 - -
Cca03g02015 1253 Pfam Protein tyrosine and serine/threonine kinase 763 1035 IPR001245 GO:0004672|GO:0006468
Cca03g02015 1253 Gene3D Phosphorylase Kinase; domain 1 721 836 - -
Cca03g02015 1253 ProSiteProfiles Protein kinase domain profile. 759 1039 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02015 1253 Pfam SBP domain 63 136 IPR004333 GO:0003677
Cca03g02015 1253 MobiDBLite consensus disorder prediction 670 709 - -
Cca03g02015 1253 PANTHER OS01G0253100 PROTEIN 349 1057 IPR045271 GO:0004714|GO:0006468
Cca03g02015 1253 SUPERFAMILY Protein kinase-like (PK-like) 735 1036 IPR011009 -
Cca03g02015 1253 PANTHER STRUBBELIG-RECEPTOR FAMILY PROTEIN 349 1057 - -
Cca03g02015 1253 Gene3D - 53 124 IPR036893 GO:0003677|GO:0005634
Cca03g02015 1253 Gene3D Ribonuclease Inhibitor 372 601 IPR032675 -
Cca03g02015 1253 Gene3D Transferase(Phosphotransferase) domain 1 838 1064 - -
Cca03g02015 1253 SUPERFAMILY SBT domain 61 142 IPR036893 GO:0003677|GO:0005634
Cca03g02015 1253 MobiDBLite consensus disorder prediction 670 707 - -
Cca03g02015 1253 MobiDBLite consensus disorder prediction 25 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02015 Cca-Chr3 40272874 40290358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02015 356 1051 Strubbelig Receptor Gene Family AT5G06820 49.657 0.0 636
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Cca03g02015 PK_Tyr_Ser-Thr 1.2e-32 CL0016
TF SBP Cca03g02015 PK_Tyr_Ser-Thr 1.2e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02015 - - gmx:100775254 1185.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02015 03 40272874 40290358 Cca03g02015 03 40272874 40290358 ECH