Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02014 ATGAGTCTCCAAAGCAACCTCCTATCTCTTTTGGTTCCCTTGGCAGCAGTTTTTGTATCTTTGTATTTCATAAATCCAATTCCACATTTTCTCAACAACTTCACATATTTGAGTCTCACAAACTTGTCACCATCATCTATATACTTGGCAAAACCTTTAGCTTGGAATTGGAACTTCCACAAAAACCATCATCATCGACCACACAAGAAACACCCTGACAATGGGAACACTGATTCTGTTTGTGATGATTTTCCACCAGGCATTCCACCTCCAAATACTAATACCACTTCTTATCTTTGTGTTGATCGAAAAGGGTGTTGTAATTTCACAACAGTACAAGCAGCCGTGAATGCAGTTCCAGATTTTAGTCTAAAAAGAACCATAATTTGGATAAACAATGGCATCTACTATGAGAAGGTTATGGTGCCAAAAACCAAACCCAACATTACATTTCAAGGACAAGGCTATATTTCAACTGCGATTGCATGGAATGATACTGCATTGTCTGCGAATGGAACATTTTATAGTGGATCTGTACAAGTTTTCGCCTCCAATTTCATTGCTAAGAACATAAGCTTCATGAATTTAGCACCAATACCAAGTCCTGGGGCCGTAGGGGCACAAGCAGTAGCTATTAGAATTTCGGGCGATCAATCTGAATTCAGGGGTTGTGGATTCTTCGGAGCCCAAGACACCCTTCATGATGATAAGGGTCGTCATTACTTCAAAGATTGTTACATTCAAGGTTCCATTGACTTCATATTCGGCAATGCAAGGTCACTCTATGAGAATTGTGAGTTAGTTTCTATAGCTAACCCTGTACCTGTGGGACAAAAGAGCATAAATGGTGCTGTTACGGCTCATGGTAGAGTTTCCACCGATGAAAATACAGGATTTGCATTTGTGAATAGTACAATTGGAGGAACTGGAAGAATATGGTTGGGTAGGGCATGGAGACCTTATTCTCGTGTTATTTTTGCCTTCACAGTAATGTCAGATATCATTGCTCCTGAAGGTTGGAATGATTTCAACGACCCTTTAAGAGATCAGACTATTTTCTATGGAGAATACAATTGCTCAGGACCCGGGGCTAATATGAACTTTAGAGCACCTTATGTACAAAAATTAAATGAAACACAAGCTTTGACATTTCTCAACACAAGTTTTATTGATGGTGACCAATGGTTGGAAACTTCCAACTAA 1203 0.394 MSLQSNLLSLLVPLAAVFVSLYFINPIPHFLNNFTYLSLTNLSPSSIYLAKPLAWNWNFHKNHHHRPHKKHPDNGNTDSVCDDFPPGIPPPNTNTTSYLCVDRKGCCNFTTVQAAVNAVPDFSLKRTIIWINNGIYYEKVMVPKTKPNITFQGQGYISTAIAWNDTALSANGTFYSGSVQVFASNFIAKNISFMNLAPIPSPGAVGAQAVAIRISGDQSEFRGCGFFGAQDTLHDDKGRHYFKDCYIQGSIDFIFGNARSLYENCELVSIANPVPVGQKSINGAVTAHGRVSTDENTGFAFVNSTIGGTGRIWLGRAWRPYSRVIFAFTVMSDIIAPEGWNDFNDPLRDQTIFYGEYNCSGPGANMNFRAPYVQKLNETQALTFLNTSFIDGDQWLETSN 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02014 400 PANTHER PECTINESTERASE 8-RELATED 15 398 - -
Cca03g02014 400 SUPERFAMILY Pectin lyase-like 98 397 IPR011050 -
Cca03g02014 400 Gene3D - 92 400 IPR012334 -
Cca03g02014 400 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 15 398 - -
Cca03g02014 400 Pfam Pectinesterase 101 393 IPR000070 GO:0030599|GO:0042545
Cca03g02014 400 ProSitePatterns Pectinesterase signature 2. 247 256 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02014 Cca-Chr3 40262461 40266273 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02014 70 400 Carbohydrate Esterase AT1G05310 73.414 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02014 - - gmx:100806629 717.613