Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02011 ATGCAGAGGCCTCCACCAGAAGATTTTTTGTTGAAGGAGACCAATCCCCACCTTGGAGGGGGAAAGGTCTCTGGTGACAAGCTTACTAGCACTTATGACCTTGTTGAGCAAATGCAGTACCTCTATGTGAGGGTTGTGAAGGCTAAGGACTTACCTGCGAAGGATGTCACTGGCAGTTGTGACCCTTATGTTGAAGTCAAGCTGGGGAACTACAAAGGCACCACTCGGCACTTCGAGAAGAAGACTAACCCTGAATGGAGCCAGGTTTTTGCTTTCTCCAAAGACCGCATTCAGGCTTCCATGCTAGAGGTTACTGTGAAGGATAAGGATGTTGTGAAGGATGACTTCATCGGTCGTGTCTGGTTTGACCTCAATGAGATCCCGAAGCGTGTTCCTCCGGATAGCCCTCTTGCCCCTCAGTGGTATAGGCTCGAGGACAGAAAGGGTGATAAGGTGAAGGGGGAGCTAATGCTGGCTGTTTGGATGGGTACACAAGCTGATGAAGCGTTTCCTGAAGCGTGGCACTCAGATGCTGCAACGGTTAGTGGGACTGATGCTCTTGCAAACATTAGATCGAAGGTGTATCTATCTCCAAAGCTTTGGTATTTGAGGGTTAATGTGATTGAGGCACAAGACTTGCAGCCAACTGACAAGGGTAGATACCCTGAAGTTTTAGTGAAGGCTAGTCTGGGAAACCAGACCATGAGGACTAGAATCTCTCAAAGCAGGACTATCAATCCAATGTGGAATGAGGATTTGATGTTTGTGGCTGCAGAACCATTTGAGGAGCCTCTGATTTTGAGTGTGGAAGACAGAGTTGCCCCTAACAAAGAGGAATCACTGGGGAGGTGCGCAATTCCCTTACAGATGGTGGAGCGGAGACTGGATCACAAACCTGTGAATACTAAGTGGTATAACATTGAAAAACATGTTGTTATTATGGAAGGGGAAAAGAAGAAGGAGTTCAAGTTTTCTAGCAAGATTCATATGAGGATTTGTCTGGAAGGTGGATATCACGTTTTGGATGAATCAACTCACTACAGCAGTGATCTCCGCCCAACTGCAAAACAGCTGTGGAAGTCAGGTATTGGAGTTCTTGAATTGGGGATATTGAGTGCTCAGGGTTTAATGCCAATGAAAACAGGGGATGATAAGGGGAAAACAGATGCTTATTGTGTAGCAAAATATGGGCAGAAGTGGGTGCGGACAAGGACAATAATTGATAGCTTTGCACCCAAGTGGAATGAGCAATATACTTGGGAGGTTTTTGATCCTTGCACTGTCATTACAATCGGTGTATTTGATAACTGTCATTTGCATGGTGGTGATAAGGCTGGAGGGGCAAAGGATTCCAAAATTGGAAAGGTACGAATCCGTCTTTCCACCCTTGAGACTGACCGTGTCTATACACATTACTATCCACTTCTAGTTCTTCATCCGTCTGGGGTGAAGAAAATGGGTGAAATTCACTTGGCTGTAAGGTTTACCTGTTCTTCCTTGCTTAATATGATGCACATGTATTCACTACCTTTGCTACCTAAGATGCACTATATTCACCCGCTAACTGTCAGCCAGCTTGACAATTTGAGGCATCAAGCTACTCAGATTGTTTCAATGAGACTGAGTCGTGCTGAGCCACCATTAAGAAAGGAGATAGTTGAATATATGCTGGATGTGGGTTCCCACATGTGGAGTATGAGAAGAAGCAAGGCCAACTTTTTCAGAATTATGGGAGTTTTGAGTGGATTAATTTCTGTAGGAAAATGGTTTGACCAGATTTGTAACTGGAAAAACCCCATCACAACGGTTCTGATCCATATCCTGTTCATAATATTGGTCATGTACCCTGAGCTTATCTTACCCACAATATTCCTTTACCTCTTCTTGATTGGAGTTTGGTACTATAGATGGAGGCCAAGGCACCCTCCTCACATGGACACTCGTCTATCTCATGCAGACTCTGCGCACCCGGATGAACTCGATGAAGAGTTCGACACATTCCCAACCACCAGGCCTTCAGACATTGTTAGGATGCGATATGACCGACTTAGGAGCATTGCTGGGAGGATACAGACTGTGGTTGGTGATTTGGCCACTCAAGGGGAGAGGCTGCAGTCTTTGCTCAGCTGGAGAGATCCAAGAGCTACTGCCCTCTTTGTGATTTTCTGTCTGGTTGCTGCCATTGTACTCTATGTGACTCCCTTCCAAGTTGTGGCCCTTCTAACCGGAATTTATGTGTTGAGACACCCCAGGTTCCGCCACAAGCTTCCTTCAGTGCCTCTGAATTTCTTCAGGAGGCTCCCTGCAAGAACTGATTGCATGCTCTGA 2328 0.4588 MQRPPPEDFLLKETNPHLGGGKVSGDKLTSTYDLVEQMQYLYVRVVKAKDLPAKDVTGSCDPYVEVKLGNYKGTTRHFEKKTNPEWSQVFAFSKDRIQASMLEVTVKDKDVVKDDFIGRVWFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVKGELMLAVWMGTQADEAFPEAWHSDAATVSGTDALANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRYPEVLVKASLGNQTMRTRISQSRTINPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKEESLGRCAIPLQMVERRLDHKPVNTKWYNIEKHVVIMEGEKKKEFKFSSKIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSGIGVLELGILSAQGLMPMKTGDDKGKTDAYCVAKYGQKWVRTRTIIDSFAPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGAKDSKIGKVRIRLSTLETDRVYTHYYPLLVLHPSGVKKMGEIHLAVRFTCSSLLNMMHMYSLPLLPKMHYIHPLTVSQLDNLRHQATQIVSMRLSRAEPPLRKEIVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLISVGKWFDQICNWKNPITTVLIHILFIILVMYPELILPTIFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEEFDTFPTTRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCLVAAIVLYVTPFQVVALLTGIYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02011 775 ProSiteProfiles C2 domain profile. 347 473 IPR000008 -
Cca03g02011 775 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 40 177 IPR035892 -
Cca03g02011 775 Gene3D C2 domain 39 161 IPR035892 -
Cca03g02011 775 MobiDBLite consensus disorder prediction 1 23 - -
Cca03g02011 775 PANTHER PROTEIN QUIRKY-LIKE 1 775 - -
Cca03g02011 775 ProSiteProfiles C2 domain profile. 181 305 IPR000008 -
Cca03g02011 775 PANTHER C2 CALCIUM/LIPID-BINDING PLANT PHOSPHORIBOSYLTRANSFERASE FAMILY PROTEIN 1 775 - -
Cca03g02011 775 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 364 505 IPR035892 -
Cca03g02011 775 Gene3D C2 domain 188 334 IPR035892 -
Cca03g02011 775 Gene3D C2 domain 349 497 IPR035892 -
Cca03g02011 775 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 355 IPR035892 -
Cca03g02011 775 ProSiteProfiles C2 domain profile. 22 142 IPR000008 -
Cca03g02011 775 CDD C2D_MCTP_PRT_plant 365 492 - -
Cca03g02011 775 CDD C2C_MCTP_PRT_plant 202 353 - -
Cca03g02011 775 Pfam Plant phosphoribosyltransferase C-terminal 620 775 IPR013583 -
Cca03g02011 775 Pfam C2 domain 201 307 IPR000008 -
Cca03g02011 775 Pfam C2 domain 40 133 IPR000008 -
Cca03g02011 775 Pfam C2 domain 365 475 IPR000008 -
Cca03g02011 775 CDD C2B_MCTP_PRT_plant 40 164 - -
Cca03g02011 775 SMART C2_3c 40 136 IPR000008 -
Cca03g02011 775 SMART C2_3c 365 472 IPR000008 -
Cca03g02011 775 SMART C2_3c 202 300 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02011 Cca-Chr3 40228949 40232765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02011 1 775 Lipid Metabolism Gene Families AT3G57880 90.065 0.0 1476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02011 - - gmx:100818371 1506.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02011 03 40228949 40232765 Cca10g01618 10 27860411 27862807 ECH
Cca03g02011 03 40228949 40232765 Cca04g01936 04 37711639 37715635 ECH
Cca03g02011 03 40228949 40232765 Cca03g02011 03 40228949 40232765 ECH
Cca03g02011 03 40228949 40232765 Cca02g00769 02 20049528 20052239 PCT