Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02010 ATGGCTTCCAAGGCcaccaacccaacaccaactactcaattggaaccactcccaccaccacaacaccgtcatcctcatcatcatcatcagatacatgaccatcatATTTCTTTCGGAATGATGCAATCTTCTTCTTCATCTTCCTCTATCCCCGGAAACTATGTTCTAAGCAAGGACTCTGGAGCTTATGACTTGGGGGAATTGGATCAAGCCTTTTTCCTCTACCTTGATGGACAAGCAGACCCCTCTAGTGTTCAAGATCAAAGACAGAACTCGTCATCAGGAATGAGGCCTCCAACTCTCAACATTTTCCCGTCCAAGCCTATGCACGTAGAGCCATCATCATCCAAGTCCAAGGCTAACGTGGAGCTAGTTTCTCCGCAAACAAGTGGATCTAAGAGACCATCAGAACAGTCTATGGAGATGGCCAACCCTCGAAACGAAACTGCTTCTGCCCCTCAACCACCCAAAGCTGTCAAGCGAGAGGGCAATCGCAAAGGTCCAACGTCAAGTTCTGAACAAGAAGGACCTAAAACACCGGATCCTAAGACACTGAGAAGACTTGCTCAGAATAGAGAGGCAGCTAGGAAAAGCAGGCTTAGGAAAAAGGCATATGTTCAACAACTAGAGTCGAGTAGGATTAGGCTTAATCAGCTGGAACAAGAGCTACAACGTGCTAGATCTCAAGGCATGTTCTTAGGTGGAGGTGCACTTATGGGAGGAGAGCAAGGCCTTCCTGTCGCTATGAATACCACTAGCTCGGAGGCTGCAATGTTTGACGTGGAATATGCTAGATGGCTAGAGGAACACCACCGCATAGTGTGTGAGCTAAGAGCTGCAGTGCAAGAGCACCTTCCCGAGAACGAGCTTAGAATGTTTGTGGACAATTGTTTGGCGCATCATGATCAAGTAATGAACCTCAAGAGCTTAGTGGCCAAAACAGATGTGTTCCATCTTGTTTCTGGCATGTGGAAGACCCCAGCTGAACGTTGCTTCATGTGGATCGGTGGATTCAGACCATCTGAACTCATTAAGATTATTCTGAATCAAATTGAGCCTCTGACGGAGCAACAAATATTGGGTATATGTGGGTTGCAACAATCTACGCAAGAATCAGAAGAGGCTCTCTCACAAGGGCTTGATGCTCTCAATCAATCTCTCTCAGACACTATAACATCAGATTCTCTGAGTTATCCTCCCAATATGGCTAACTACATGGGACAGATGGCCGTGGCCATGAACAAACTCTCCACGCTTGAAGGTTTCGTGAGACAGGCAGATAATCTGAGGCAGCAAACGATTCACCGTCTGCACCAGATCCTAACGACCCGTCAAGCAGCAAGGTGTTTTCTGGCCATAGCGGAGTACTTCCATCGTCTGAGAGCCCTTAGTTCGTTGTGGTTGGCACGCCCTCGTCCAGAATAG 1425 0.4449 MASKATNPTPTTQLEPLPPPQHRHPHHHHQIHDHHISFGMMQSSSSSSSIPGNYVLSKDSGAYDLGELDQAFFLYLDGQADPSSVQDQRQNSSSGMRPPTLNIFPSKPMHVEPSSSKSKANVELVSPQTSGSKRPSEQSMEMANPRNETASAPQPPKAVKREGNRKGPTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLNQLEQELQRARSQGMFLGGGALMGGEQGLPVAMNTTSSEAAMFDVEYARWLEEHHRIVCELRAAVQEHLPENELRMFVDNCLAHHDQVMNLKSLVAKTDVFHLVSGMWKTPAERCFMWIGGFRPSELIKIILNQIEPLTEQQILGICGLQQSTQESEEALSQGLDALNQSLSDTITSDSLSYPPNMANYMGQMAVAMNKLSTLEGFVRQADNLRQQTIHRLHQILTTRQAARCFLAIAEYFHRLRALSSLWLARPRPE 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02010 474 CDD bZIP_HBP1b-like 183 235 - -
Cca03g02010 474 SMART brlzneu 179 252 IPR004827 GO:0003700|GO:0006355
Cca03g02010 474 PANTHER TRANSCRIPTION FACTOR TGA9 73 472 - -
Cca03g02010 474 MobiDBLite consensus disorder prediction 81 186 - -
Cca03g02010 474 PANTHER BZIP TRANSCRIPTION FACTOR TGA10 73 472 - -
Cca03g02010 474 MobiDBLite consensus disorder prediction 81 100 - -
Cca03g02010 474 Pfam Seed dormancy control 274 348 IPR025422 GO:0006351|GO:0043565
Cca03g02010 474 Gene3D - 182 233 - -
Cca03g02010 474 ProSiteProfiles DOG1 domain profile. 256 470 IPR025422 GO:0006351|GO:0043565
Cca03g02010 474 MobiDBLite consensus disorder prediction 109 151 - -
Cca03g02010 474 Coils Coil 202 229 - -
Cca03g02010 474 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 186 201 IPR004827 GO:0003700|GO:0006355
Cca03g02010 474 SUPERFAMILY Leucine zipper domain 183 225 IPR046347 GO:0003700|GO:0006355
Cca03g02010 474 Pfam bZIP transcription factor 183 217 IPR004827 GO:0003700|GO:0006355
Cca03g02010 474 MobiDBLite consensus disorder prediction 1 32 - -
Cca03g02010 474 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 181 225 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02010 Cca-Chr3 40195879 40203348 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02010 52 472 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 65.385 0.0 556
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Cca03g02010 DOG1 3.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02010 K14431 - gmx:100815176 805.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02010 03 40195879 40203348 Cca03g02010 03 40195879 40203348 ECH
Cca03g02010 03 40195879 40203348 Cca02g00771 02 20097996 20107330 PCT