Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02005 ATGGCTTTTCAAGTCTTACTCATCTGTTTGATGTTCACCATCATAATCATGTTTACATCCATATTGGGTAGAAAGCAAAACAAAACCTTAATCCACCTTCCACCAAGTCCCATAGCCCTTCCCATCATTGGCCACCTCCACCTTCTTTCCCCAATACCTCATAATTTTCATAAGCTCTCAATCCATTATGGACCCATCATACATCTTTTCCTTGGATCAGTCCCTTGTGTGGTGGTTTCCACGGCAGAAGCCGCCAAAGAGTTCCTCAAAACTCACGGAAACTCCTTCTCTGACCGCCCTCGATCTATTTCCATCAAGGCCATATCCTACGGCTATAAAGACTTCATGTTTGCACAATACGGATCTTATTGGAAGTTCATGAAGAAACTTTGCATGTCTCAACTTCTCGGTGCTCGCATGCTAGACCAGTTCCTTCCCGTGAGACGACAAGAGACACAAAGATTCATTAAACGTGTGCTCCATAATGGGGTCGCTCGTGAAGCCATGGATTTTGGAAAAGAGTTCATGACACTTTCGAATCGCATCGTGTCAAGAATGAGCATGAGTCGGACAAGTTCTGAGAACGAAAATGAAGATGTAGAGATTAGGAAGCTCATGGCCGATACCGCAGAACTCATGGGGAAGTTCAACATATCAGACTTTATTTGCTTCTTGAAGAATTTTGATTCGCAGTTGCAGGGATTCAACAAGAGGCTCAAGCAAATTCGGCACAGGTTTGACACCTTGATGGATACAATTATTAAGGAACGTGAAGAGCAAAGAAGGAAGAATAAGGAAATAGGTGGAACACGTCAACTTAGGGATATGCTTGATGTTTTACTAGACATACTTGAAGATGAGAATTCTGAAATGAAATTGGACAAAGAGAACATCAAGGCCTTCTTCTTGAATATATTTGTTGCTGGAACCGACACGTCAGCTATAACCATGGAATGGGCTATGGCAGAGTTAATCAACAATCCACATGTGTTGGAGAAGGCAAGGCAAGAAATGGATGTAGTGATTGGGAAGAGTAGAATAGTAGAAGAATCAGATATTGTGAACCTTCCATACCTGCAAGCCATTGTTAAAGAAACATTGAGAATTCACCCAGCTGGTCCATTGCTTTTTAGAGCCTCATCAAAAAGTGCAGTAATTTGTGGTTATGATATTCCAGCCAAGACTCGATTATTTATTAATGTTTGGGCTATTGGTAGGGACCCCAATCACTGGGAGAACCCACTTGAGTTCAAGCCAGAGAGGTTTATTGGAAATGGGCAGAGTCAATTGGATGTTAGGGGACAACATTATCATCTAATTCCGTTTGGGAGTGGAACAAGAGGGTGTCCTGGTACTTCTCTAGCATTGCAGGTTATGCATGTCAATCTGGCTGCTATGATTCAGTGTTTCCAATGGAAGGTTTATGGCAATGGCACGGTGGACATGAAAGAGAAGTCTGCTGGCATCACTGTTCCTAGGGCTCACCCTATCATTTGTGTTCCTGTTCCAAGGCTTAACCCATTCCCTCTATGTGATTAA 1539 0.4263 MAFQVLLICLMFTIIIMFTSILGRKQNKTLIHLPPSPIALPIIGHLHLLSPIPHNFHKLSIHYGPIIHLFLGSVPCVVVSTAEAAKEFLKTHGNSFSDRPRSISIKAISYGYKDFMFAQYGSYWKFMKKLCMSQLLGARMLDQFLPVRRQETQRFIKRVLHNGVAREAMDFGKEFMTLSNRIVSRMSMSRTSSENENEDVEIRKLMADTAELMGKFNISDFICFLKNFDSQLQGFNKRLKQIRHRFDTLMDTIIKEREEQRRKNKEIGGTRQLRDMLDVLLDILEDENSEMKLDKENIKAFFLNIFVAGTDTSAITMEWAMAELINNPHVLEKARQEMDVVIGKSRIVEESDIVNLPYLQAIVKETLRIHPAGPLLFRASSKSAVICGYDIPAKTRLFINVWAIGRDPNHWENPLEFKPERFIGNGQSQLDVRGQHYHLIPFGSGTRGCPGTSLALQVMHVNLAAMIQCFQWKVYGNGTVDMKEKSAGITVPRAHPIICVPVPRLNPFPLCD 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02005 512 Pfam Cytochrome P450 34 499 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g02005 512 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 442 451 IPR017972 GO:0005506|GO:0016705
Cca03g02005 512 PANTHER CYTOCHROME P450 FAMILY PROTEIN 6 509 - -
Cca03g02005 512 Coils Coil 225 245 - -
Cca03g02005 512 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 6 509 - -
Cca03g02005 512 Gene3D Cytochrome P450 26 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g02005 512 PRINTS E-class P450 group I signature 60 79 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g02005 512 PRINTS E-class P450 group I signature 84 105 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g02005 512 PRINTS E-class P450 group I signature 297 314 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g02005 512 PRINTS E-class P450 group I signature 317 343 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g02005 512 PRINTS E-class P450 group I signature 360 378 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g02005 512 PRINTS E-class P450 group I signature 400 424 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g02005 512 PRINTS E-class P450 group I signature 439 449 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g02005 512 PRINTS E-class P450 group I signature 449 472 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g02005 512 PRINTS P450 superfamily signature 308 325 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g02005 512 PRINTS P450 superfamily signature 361 372 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g02005 512 PRINTS P450 superfamily signature 440 449 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g02005 512 PRINTS P450 superfamily signature 449 460 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g02005 512 SUPERFAMILY Cytochrome P450 34 504 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02005 Cca-Chr3 40163410 40165635 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02005 5 504 Cytochrome P450 AT5G06900 46.720 2.95e-166 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02005 K24188 - gmx:100815706 758.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02005 03 40163410 40165635 Cca03g02005 03 40163410 40165635 ECH