Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02001 ATGGATTCGAATTCCCGTTACCAAGTTCAGCAACCCAATTCTGGGTTACTTCGTTTTCGCTCTGCTCCTGCTCCAGTTCTGGCCAATTTCAAACAAGGCCAAGCTGTGAATAACGGTAACCCGTGGGAGGGTTCTGAAACCGTTTTCAGATTCTTCAATTCCGACACGACCACGTGGCCCAGGTTACGAGAATTCGTGGATAATAAGGTGGCTCCTAATAACGCAGCCAAGGAATCATCATCACCTCTGGGTCGCATGAATTCCCAACAGGGTTATACTACTTCTTCTTCTTCTGTGTTACCCTTACCCCCGAGGCATGACTCTGGTGTAACTTCAGATATCATGCTGGGTTCTATAGGAATGGATCAGAGTACAAACAAAAGTTTTAATTCTCATCTTCTCCGCCAGAGTAGCTTCCCTAACAACATCTCCTTTCAGAACGGGTATGATGCTATGAAAGGTGTTGGAAACTACGGTGGGGTTAATGACAATGATGGTGAACTTAGTCTATCTATGAACAGAATGAAGAGTCAAATTAGCTTCTCTTCAAGGAATCCTTCTTCCTTAGGAATGCTATCACCAAACTCCAAAATGGGAAATGAAGGTGTTGGGATAAATAGCCCTGAGGATGGGAGACATGAAGGTAGCAATGGTGATGCTCGATATTTTGGCCCTGGATTCTCTTATGCTTCATGGGATGACACTTCACATCTGAAAAGAAAGAGAAATAGTAATGATGAGTTGCTTTCTGATGCACAGCATGGAGAGGTGGGAAATCAAGTTCATACACTTTCGCATCAGTTGAGTTTGCCAAGAACTTCGTCGGAGATGTTTGCTATGGATAATTTGCTTCAGTTCACGGATTCTGTTCCTTGTAAAATCAGAGCAAAGAGGGGCTTTGCTACTCATCCTCGAAGCATTGCTGAAAGGGTGAGAAGAACTCGAATAAGTGAACGAATAAGAAAATTGCAAGAGCTTGTTCCAAACATGGAGAAGCAAACCAGCACGGCAGAGATGTTGGACTTGGCTGTAGAGTACATAAAAGATCTTCAGAAACAATTCAAGACACTGAGCGAAAGACGAGCTAAATGCAAATGTATAAACATTCACAAGTCAGAAACAAATCAAATTGCTTGA 1137 0.4283 MDSNSRYQVQQPNSGLLRFRSAPAPVLANFKQGQAVNNGNPWEGSETVFRFFNSDTTTWPRLREFVDNKVAPNNAAKESSSPLGRMNSQQGYTTSSSSVLPLPPRHDSGVTSDIMLGSIGMDQSTNKSFNSHLLRQSSFPNNISFQNGYDAMKGVGNYGGVNDNDGELSLSMNRMKSQISFSSRNPSSLGMLSPNSKMGNEGVGINSPEDGRHEGSNGDARYFGPGFSYASWDDTSHLKRKRNSNDELLSDAQHGEVGNQVHTLSHQLSLPRTSSEMFAMDNLLQFTDSVPCKIRAKRGFATHPRSIAERVRRTRISERIRKLQELVPNMEKQTSTAEMLDLAVEYIKDLQKQFKTLSERRAKCKCINIHKSETNQIA 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02001 378 MobiDBLite consensus disorder prediction 73 102 - -
Cca03g02001 378 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 300 350 IPR011598 GO:0046983
Cca03g02001 378 PANTHER TRANSCRIPTION FACTOR BHLH130 8 370 - -
Cca03g02001 378 Pfam Helix-loop-helix DNA-binding domain 306 351 IPR011598 GO:0046983
Cca03g02001 378 SMART finulus 306 356 IPR011598 GO:0046983
Cca03g02001 378 MobiDBLite consensus disorder prediction 180 202 - -
Cca03g02001 378 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 370 - -
Cca03g02001 378 Coils Coil 313 333 - -
Cca03g02001 378 MobiDBLite consensus disorder prediction 73 108 - -
Cca03g02001 378 CDD bHLH_AtbHLH_like 305 358 IPR045239 -
Cca03g02001 378 MobiDBLite consensus disorder prediction 180 220 - -
Cca03g02001 378 Gene3D - 302 371 IPR036638 GO:0046983
Cca03g02001 378 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 303 366 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02001 Cca-Chr3 40130575 40133282 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02001 1 356 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 41.514 6.71e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca03g02001 HLH 1.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02001 - - gmx:100796534 517.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02001 03 40130575 40133282 Cca03g02001 03 40130575 40133282 ECH
Cca03g02001 03 40130575 40133282 Cca10g00357 10 3776902 3780272 ECH
Cca03g02001 03 40130575 40133282 Cca04g00556 04 5506554 5510904 ECH
Cca03g02001 03 40130575 40133282 Cca02g00779 02 20638498 20642461 PCT