Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02000 ATGTTGGATTGGGACACAGAACACACAGACAAGGTGGTCAAGCTTCTACAGTTCGATAATAGAAGCAGTGCAGAGGGAAGGTCAGAAAAATTCAAAGTTTCAAACGCAGCACATGACCTCGAGAAGGGCCACCTCTCTGAGCTCCGACGGCCTCTCCCTGCTGGCCCTGAAAGCCGCCGTGGGATCCGACCCCAGCGGCGTGCTGAGCTCGTGGTCGGAAAGCGACGCCAGCCCATGCGAGTGGGAGGGAGTGTCCTGCAACGAGGGGCAGGGGCACGTGACGCATCTCTCACTCCCAAACAAGAGGCTCTCCGGCTACATCCCCTCGGAGCTGGGCTTCCTAACCTCTCTCAGAAGCCTCTCCCTCCCTTACAACAACTTCTCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACGCTCCTCCTCCTCGACCTCTCCCACAACGCCCTCTCCGGTCCCCTCCCCGCCGACCTCGCCTCTCTCCCCTCCCTCCGCCATTTCGACCTCTCCTCCAACGCCCTCAACGGCACACTCCCCGACACCCTCTCCCACCTCACCTCCCTCGCCGGAACGCTCAACCTCTCCTTTAACCACTTCTCCGGCGGCATTCCCCCCTCCCTCGGGGCTCTCCCCGTCGCCGTCAGCCTCGACCTCCGCCACAACAACCTCACCGGGAAAATCCCCCAGGTGGGGGCCCTCTTGAACCAGGGCCCCACCGCCTTCGCCGGTAACCCTGGTCTCTGTGGTTTTCCCTTGCAGAACGCCTGCCCCGAGGCGGAAAGGTCCGGTTTTTATTCAAACCCTGAAGAGGGTAATCCTGAGAATCCCAATGCGCTTCACCCTCAAGGGGTATCCGAGGGAGGGAGACAGCACGCCGGCGGCGGCGGTGGGTCCGTCGCGGTTTTGGTCATCTCCGGGCTCTCCGTCGCGGTTGGGGCGGTGTGTCTTTCTTTGTGGGTTTTCcggcggcggcggggcggcggggaggaggAAAAATTGGGGAATGGTGGGAAGTTGGAGAATGAGGTGGATGGGGGAGAGGGGCAAGAGGGTAAATTTGTGGTTGTGGATGAAGGGTTTGAGTTGGAGTTGGAGGATTTGTTGAGGGCTTCTGCTTATGTTGTTGGGAAGAGCAGGAGTGGGATTGTGTACAAGGTTGTCGGTGTTGGGAGAGGGTCGTCCACGGCGGCGAATGTGGTGGCCGTGCGCCGGCTCAGTGAGGGAGATGCCACGTGGCGGTTCAAGGAGTTTGAGGCTGAGGTGGAGGCCATTGCTAGGGTTCGTCACCCCAGTGTTGTGCCTCTGAGGGCTTATTATTACGCGCATGATGAGAAGCTTCTTATCACTGATTTCATTCGCAATGGAAGCTTGCACACTGCGTTACATGGTGGTCCTTCCAATTCATTGCCACCGTTATCATGGTCAGCAAGGTTAAGAATTGCTCAAGAGGCAGCAAGGGGCTTGATGTACATACACGAGTTCAGCGGTCGCAAATACATTCATGGCAACCTGAAGTCAACAAAAATCTTACTGGATGATGAGTTCCATCCATACGTGTCGGGTTTTGGACTTACTCGGCTTGGTTTGGGCCCACCAAAGTCCACTACGGTGGCGCCAAAACGGCACAGCTTGAACCAATCTAGTATAACCACTGCAATGAGTTCAAAGATTACAGCTTCATTTAACCACTACTTGGCACCCGAGGTGCGCATGGCTGGTGGCAAGTTCACTCAGAAATGTGATGTATATTCTTTTGGAATTGTGCTCTTGGAACTTTTGACGGGTAGGATGCCAGAATTTGGATCAGAAAATGATGACATAGTGCTAGAGAGTTTTGTGAGGAAAGCGTTCAAGGAGGAGCAGCCATTGTCTGATATCATAGACCCAGCACTTATCCCTGAAGTTTATGCTAAAAAGCAAGTCATTGCTGCATTTCATGTTGCTCTGAACTGCACTGAACTTGATCCGGAGTTGCGACCTAGGATGAAAACCGTGTCAGAGAACCTTGATCGCATCAAAGTACAGTGA 2295 0.4702 MLDWDTEHTDKVVKLLQFDNRSSAEGRSEKFKVSNAAHDLEKGHLSELRRPLPAGPESRRGIRPQRRAELVVGKRRQPMRVGGSVLQRGAGARDASLTPKQEALRLHPLGAGLPNLSQKPLPPLQQLLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLLLLDLSHNALSGPLPADLASLPSLRHFDLSSNALNGTLPDTLSHLTSLAGTLNLSFNHFSGGIPPSLGALPVAVSLDLRHNNLTGKIPQVGALLNQGPTAFAGNPGLCGFPLQNACPEAERSGFYSNPEEGNPENPNALHPQGVSEGGRQHAGGGGGSVAVLVISGLSVAVGAVCLSLWVFRRRRGGGEEEKLGNGGKLENEVDGGEGQEGKFVVVDEGFELELEDLLRASAYVVGKSRSGIVYKVVGVGRGSSTAANVVAVRRLSEGDATWRFKEFEAEVEAIARVRHPSVVPLRAYYYAHDEKLLITDFIRNGSLHTALHGGPSNSLPPLSWSARLRIAQEAARGLMYIHEFSGRKYIHGNLKSTKILLDDEFHPYVSGFGLTRLGLGPPKSTTVAPKRHSLNQSSITTAMSSKITASFNHYLAPEVRMAGGKFTQKCDVYSFGIVLLELLTGRMPEFGSENDDIVLESFVRKAFKEEQPLSDIIDPALIPEVYAKKQVIAAFHVALNCTELDPELRPRMKTVSENLDRIKVQ 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02000 764 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 228 764 - -
Cca03g02000 764 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 228 764 - -
Cca03g02000 764 SUPERFAMILY Protein kinase-like (PK-like) 463 758 IPR011009 -
Cca03g02000 764 Gene3D Ribonuclease Inhibitor 214 353 IPR032675 -
Cca03g02000 764 Gene3D Phosphorylase Kinase; domain 1 442 540 - -
Cca03g02000 764 MobiDBLite consensus disorder prediction 24 65 - -
Cca03g02000 764 Pfam Protein tyrosine and serine/threonine kinase 464 758 IPR001245 GO:0004672|GO:0006468
Cca03g02000 764 Coils Coil 124 129 - -
Cca03g02000 764 ProSiteProfiles Protein kinase domain profile. 458 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02000 764 MobiDBLite consensus disorder prediction 348 381 - -
Cca03g02000 764 Gene3D Transferase(Phosphotransferase) domain 1 541 764 - -
Cca03g02000 764 SUPERFAMILY L domain-like 228 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02000 Cca-Chr3 40115277 40121202 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02000 229 762 Receptor kinase-like Gene Family AT3G57830 60.367 0.0 625
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Cca03g02000 PK_Tyr_Ser-Thr 4e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02000 - - gmx:100796011 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02000 03 40115277 40121202 Cca03g02000 03 40115277 40121202 ECH