Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01998 ATGGAGCAAGCTCCGGGAGGATTGCGCGGATCCGTGCACGACGGCACCACACTCGACTCCATTCAATTCAACGAAGAAATTCAGGGAATCATGGCGCCGGAAAACGCTAGCTCCTTCACCGCGCTGCTCGAGCTCCCCCCCACGCAGGCGGTGGAGCTCCTTCACTCGCCGGACTCCGACAACGCCGCCGCTCGCAAACCGCCTAATTGCCACGTCAGCGCGAATCAGAAGCCCTTCCAGCTCAACTCTTTCGGCACCACCAATTTAACTTTCCCTTCCAACGCCGCCTTAATCGAACGCGCCGCCAAGTTCTCCGTGTTCGCCGGCGATAACTCGCCACCGCCGCCGGGAGACGCGCGCCTGGTCCCGGCCGCGTCCGGTTGGAATTTGGTGAAGAACGAGCCGCAAGAGACCGATTCGAACCCGTCCTCGACGCATGGTTGCGTTTCGGATCCCGCGGTCGAGAACAAGAATCAGAGGACCGCGAAGAGGAAGGAGCGAGAGAAGAAGGTAACGGTTAAAGGATCGTCGAAGAAGAGTAAGAGCGCCGCCGATGATACTTCCGGTGACGGCGAGAAGCTTCCCTACgtccacgttcgagttcgtcgaggtcaagccacagacagccatagcttggcagaaaggGCTAGGAGAGAGAAGATCAATGCTCGCATGAAGCTTTTACAAGAGCTGGTCCCAGGCTGCGACAAGATATCAGGAACGGCAATGGTTCTGGATGAAATCATAAACCATGTGCAATCTCTACAGCGTCAAGTGGAGATCTTATCGATGAAACTGGCAGCAGTTAACCCAAGAATTGATTTCAGCCTCGACAGCTTATTGGCTACTGATGGGGCATCTCTAATGGACAGTAACTTACCTAGCATGGTGACACCTCTCATGTGGCCAGAAATCCCACTCAATGGCAACCGACAGCATTATCAACAGCAGTGGCAATTCGATGCATTCCACCAACCACTATGGGAGAGGGAAGAAGTCAACCATAATTTCATAACGCCGGAAAACTCACTTTTGAGTTATGACTCGTCGGCAAACTCAGCGTCTCTGCACTCAAATCAGTTGAAGATGGAGCTCTGA 1098 0.5128 MEQAPGGLRGSVHDGTTLDSIQFNEEIQGIMAPENASSFTALLELPPTQAVELLHSPDSDNAAARKPPNCHVSANQKPFQLNSFGTTNLTFPSNAALIERAAKFSVFAGDNSPPPPGDARLVPAASGWNLVKNEPQETDSNPSSTHGCVSDPAVENKNQRTAKRKEREKKVTVKGSSKKSKSAADDTSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCDKISGTAMVLDEIINHVQSLQRQVEILSMKLAAVNPRIDFSLDSLLATDGASLMDSNLPSMVTPLMWPEIPLNGNRQHYQQQWQFDAFHQPLWEREEVNHNFITPENSLLSYDSSANSASLHSNQLKMEL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01998 365 CDD bHLH_AtBPE_like 195 280 - -
Cca03g01998 365 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 15 365 - -
Cca03g01998 365 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 15 365 IPR024097 GO:0006355
Cca03g01998 365 Gene3D - 202 274 IPR036638 GO:0046983
Cca03g01998 365 MobiDBLite consensus disorder prediction 132 196 - -
Cca03g01998 365 MobiDBLite consensus disorder prediction 157 196 - -
Cca03g01998 365 Coils Coil 245 265 - -
Cca03g01998 365 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 205 255 IPR011598 GO:0046983
Cca03g01998 365 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 203 274 IPR036638 GO:0046983
Cca03g01998 365 MobiDBLite consensus disorder prediction 132 156 - -
Cca03g01998 365 Pfam Helix-loop-helix DNA-binding domain 209 256 IPR011598 GO:0046983
Cca03g01998 365 SMART finulus 211 261 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01998 Cca-Chr3 40078968 40088040 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01998 6 365 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 50.777 7.96e-100 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca03g01998 HLH 2.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01998 - - gsj:114400298 614.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01998 03 40078968 40088040 Cca03g01998 03 40078968 40088040 ECH