Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01997 ATGGCACCAAGATGGAAAGGAAAAGATGCAAAAGCTAAGAAGGATGCAGAAGCCGAAGCGCTCAAGGAACCCATGTCAAAGATTATATCTCAGCTTCAGTCTTCTCTAGTTCAATCAGATACATGTGGATTTCTATCTGATAACAGTGTACACCTAGCAGTGGGAGCAGAACAAATTGATTTATTTGATAAAGCATGCTTTGGTCGACCTGTGAGAACAGTTGAGAAGGACAAATTATGGTTTCAACTAAGCTTCGAGGAGGCATTCTACCTAAGCTATTCCTTGAAATGCCTTAATATTAATGAGAGTGATACTGGTCCCCAAAATGATGAAGAGCTGTGGCATTACATGAAGTCCCAGAAAGAAACATTCCCTTGTCTTTACAAGGCTTATTCTCACCTTAGAATGAAAAATTGGGTGGTGAGATCAGGAGCTCAGTATGGTGTAGACTTCATTGTGTATCGTCATCATCCAGCTCGAGTCCATTCGGAGTATGGTGTGCTTGTTTTATCAGATGGGGATGATAACGATCTAGATGGAAGATTGAGAGTATGGTCTGATGTTCATTGCGCAACTCGACTTCTTGGAAGCGTTGCAAAAAGCTTACTGGTTTTACATGTTAATAAAAATGGTAACTACAATGAGTCTCCATTGTGTTTGGCAAATTACAGCGTTGAAGAACGCACAATCACCAGATGGAGTCCAGAACAGTGTCGCGAAAAAGATGCCTTGCTAAGACATCCTATTTACTGCCTTTCATCAACTTTGTTCCATGGACTTGAGGTTAGGAAAGGTGATGTGGTATTTGGGTTGTCAGCAAACACAATCTTGTGCACAACCATATGCCTAGTTGTGTTATCAGTTGGAGCCTTTCTGGTCACTGACAACCCCATCAATAGTAGGTTAGAAATTGCCAAGCAAGTGCGTGATTTAGGTGCTCAATTAGCCATCTCAACACTAAAGGAGCTACCCAAGTTGGTCCCAACTGGGGTTCCTACAATTTTATCTTCTCGTACTTCTGATGACATGATGTTATCAATTGAAGAACTAATAGAAGCTGATAAAGATGCTAGAGCTCATCTAGATGCATGTGGGAAGTTGATTCCAACTTCTTATGCAAAAGTGATAGACATTGAAACCGGGATGCCTTTGCCTCTTATTAAAGGAAACTTATGGTTCAAAAGTCCTACTATTATGTAA 1200 0.4067 MAPRWKGKDAKAKKDAEAEALKEPMSKIISQLQSSLVQSDTCGFLSDNSVHLAVGAEQIDLFDKACFGRPVRTVEKDKLWFQLSFEEAFYLSYSLKCLNINESDTGPQNDEELWHYMKSQKETFPCLYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVLSDGDDNDLDGRLRVWSDVHCATRLLGSVAKSLLVLHVNKNGNYNESPLCLANYSVEERTITRWSPEQCREKDALLRHPIYCLSSTLFHGLEVRKGDVVFGLSANTILCTTICLVVLSVGAFLVTDNPINSRLEIAKQVRDLGAQLAISTLKELPKLVPTGVPTILSSRTSDDMMLSIEELIEADKDARAHLDACGKLIPTSYAKVIDIETGMPLPLIKGNLWFKSPTIM 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01997 399 Gene3D - 123 217 IPR011856 GO:0003676
Cca03g01997 399 PANTHER TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2-1-LIKE 1 244 - -
Cca03g01997 399 SUPERFAMILY Acetyl-CoA synthetase-like 255 353 - -
Cca03g01997 399 PANTHER TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2 1 244 IPR006676 GO:0000213|GO:0006388
Cca03g01997 399 Pfam tRNA intron endonuclease, catalytic C-terminal domain 126 213 IPR006677 GO:0000213|GO:0006388
Cca03g01997 399 Gene3D - 256 360 - -
Cca03g01997 399 SUPERFAMILY tRNA-intron endonuclease catalytic domain-like 123 213 IPR036167 GO:0006388
Cca03g01997 399 Pfam tRNA intron endonuclease, N-terminal domain 43 114 IPR006678 GO:0000213|GO:0006388
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01997 256 335 Monolignol Biosynthesis Gene Families AT5G38120 42.500 1.32e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01997 K15322 - gmx:100810335 385.571