Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01994 ATGCTTCCAACGAATTATGATATTTCATCTGTTCAGCCTACTGTTGCTGCTTCTGAAGAAATCTCAGATTTTGGTCATCAGAGGGAGGATACGGAAGAACCCCATAGCTATCAGGGAGTACAAAAGGTCAAGGATAAACCAATCTATATAGGTCAAATACCTGACAATGATGCAACCAAGAGTGATCGATTAATATATCTTGGTAAATTTGACAAGGACGTACATGCAGCCAGGGCTCATGACTTGGTGGCTCTGAAACTTGGTGCAAAAACAAATTTTCCGGAAAATCAATACAAGGGAGCAGTGGAGGCTATGACTGATATGACACAAACGGAAGTTGTGGATACTGTCAGAAGGTTAAGTTTCACTTTTTTCAAGTCAATATCCACTTATCGTGGAGTCTACAGAGATTTACATACTGGGAAATGGGAAGCAAGTTTTGGTAAAGGCAGCGACGACGTCAGATTCCTTGGAATATTCGACACAGAAGATGCAGCAGCAAGGGCTTTTGATGTTGAAAGTGTAAGGTTGAAAGGACACAACGCCATTACTAATTTTAATATCAAGTTTTATAATGTTGATGCCATTTTGCGTGGAGAAACCAATGAAAATGTAATATATCAATCAAAAGGCACTGGGGCAGTGGAAGCAATGCCTTCTTTTGAAGAAGTGCTTCAGAACATTATTGCCAATGGCACCTCAAAAATACCAGATGATACAAGCAATGTGAAAAGGGAAGGGGAGCAGGAACTTCAAAGGCCAATAACGGGAAACGCTGAAGGACAGGAAAATGTGGCAATGGCTTGTGAAAGTAGTGAGGATGATGGTCAGGGAAGCTCAGCCTGCTGGTGTTTTCAGCATGGAAGGACCGATGCTTGTTAA 882 0.415 MLPTNYDISSVQPTVAASEEISDFGHQREDTEEPHSYQGVQKVKDKPIYIGQIPDNDATKSDRLIYLGKFDKDVHAARAHDLVALKLGAKTNFPENQYKGAVEAMTDMTQTEVVDTVRRLSFTFFKSISTYRGVYRDLHTGKWEASFGKGSDDVRFLGIFDTEDAAARAFDVESVRLKGHNAITNFNIKFYNVDAILRGETNENVIYQSKGTGAVEAMPSFEEVLQNIIANGTSKIPDDTSNVKREGEQELQRPITGNAEGQENVAMACESSEDDGQGSSACWCFQHGRTDAC 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01994 293 Pfam AP2 domain 131 169 IPR001471 GO:0003700|GO:0006355
Cca03g01994 293 SMART rav1_2 130 193 IPR001471 GO:0003700|GO:0006355
Cca03g01994 293 SMART rav1_2 36 100 IPR001471 GO:0003700|GO:0006355
Cca03g01994 293 MobiDBLite consensus disorder prediction 236 259 - -
Cca03g01994 293 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL7 36 210 - -
Cca03g01994 293 ProSiteProfiles AP2/ERF domain profile. 130 187 IPR001471 GO:0003700|GO:0006355
Cca03g01994 293 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 36 210 - -
Cca03g01994 293 MobiDBLite consensus disorder prediction 22 40 - -
Cca03g01994 293 Gene3D AP2/ERF domain 130 189 IPR036955 GO:0003700|GO:0006355
Cca03g01994 293 Gene3D AP2/ERF domain 36 96 IPR036955 GO:0003700|GO:0006355
Cca03g01994 293 CDD AP2 129 188 IPR001471 GO:0003700|GO:0006355
Cca03g01994 293 ProSiteProfiles AP2/ERF domain profile. 36 99 IPR001471 GO:0003700|GO:0006355
Cca03g01994 293 MobiDBLite consensus disorder prediction 22 41 - -
Cca03g01994 293 SUPERFAMILY DNA-binding domain 129 188 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01994 Cca-Chr3 40009437 40014727 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01994 37 201 AP2-EREBP Transcription Factor Family AT1G51190 40.571 9.49e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca03g01994 AP2 5.8e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01994 - K09285 ccaj:109797991 589.726