Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01993 ATGGAAGAATTTCCCTCTCTGATTGAAGGCCCCAAAAACATTGAACCAACCATGTCAAGGGATTGGTCTCAAGAGTCAGCAGGGATACCCCACAATACCCTAATCACTCCACACATTGGAACTTCTTCTCATTCTCAAGACTCGGTCAACAATTTGACCAATTGTTCAAATCACATTGGTGATCTCGAATCTTTATTAGAGGCAATTCTAGACGAAAAACACATAGAAGAATGTCTAATCCGATCCAAGTTATTGTCGTACCAAATTGGACCCAATGCAACGAATGAGGGGGAACAAAATGATCCTACCAAAACAATCAGTAGCAGGAGCTCTGTCTATAGGGGGGTAACCAAGGCCAAAGAGGATCGTTTCGAGGCATTTGTTTGGGATAACACCGATCCTGAGGGGAGAGGAAAAACAGTTTATATTGGTGCTTTTGCGAATGAAATTGACGCTGCTAGAGCTCATGATATGGTGTCAATTAAGATAGGGGGCTTGAACACATTAACAAATTTTCCGGTGAGATGCTATTGGAGAGAATTGGAGGAAATACAAAGTATGAGCAAAAAAGAGTATATCGAGGCTGTTAGAAGGAGGGGCAAGGGCTTTACTGACATGGAAACCCCTTTCCGTGGTGTCTACAGGATTGGGGAGAGCAGGAAATGGGAAGCGAGGCTGAGTCGTGAGGGGTTTCCAACCATAAACTTGGGAATTTATTACACCGCAGAGGATGCAGCCAGAGCTTATGATATTCTATCAATAAAACTGAAGGGATATGATGCGGTTACCAATTTTGATTTGCATTCCTATGAAGTGGCGGGAATTATGGAGTGTGTAGTCGCACAACAAACGGATGGATCAGTTGTTTTGCAGATGGTAGGAAGCAACAATGAAACTGAAGCAAATCCACAAAACAGCTCCCTAGACCAAAACAATCCTCAAAACAGCTCCCTAAACCAAAACAACCCTCAACAACCGGGCAACTCATCATTTTCTCATGGCAGCCAAAACCCTAATCTCATATCAAACAACCCTTGTACTCAAGGAAACTCATCATTATCTCATGGCAGCCAAAACCCTAATCTCATCTCAAGCAACCCTTGTACTCAAGGAAACTCGTCACTTTCTCATGGCAGCCAAAACCCTAATCTCATTCCAAGCATCCCTTGTACTCTAGGCAATGCATCATTTTCTCATGGCAGCCAGAGCTCTAATCTCATTTCAAGCAACCCTTATACTCTAGGTGGATTCACTGGTGGTGCCGGAACTAGCGGCAATACAATTTTTAACCACGGAGGAGAGTTTCCAACTCTGAATGCTACACTGCAACAGCCCCTTCAGACTCAATACCAAGTGAATGTTAACAATAGTTACAATCAGAACCTTCTCATCAACAACAACCAGTTTCTGCTTCAGAGTTGTAGTATTCCTTTGCTTGCTCGTAGCACCCAAAACCTTGACCTAGAAAAGTGTCTCCATTTCCCTGATTGGCCATCTGGTTTTGGAAAACAATTACTCGGGGGGAACGTGGAATTGGAACCTGTACCTGTAAGTAATACTACTACCCCGAATGTGCAGCATCAAACCCATGGGGTACTGGTGAGTGAAAATACAAGAGCAATAAATGGAGTTGGATCATTTGGGTCTGAGATTCGTCCCGTGGAACCATCTAATCTGGGATTTGGAGCAATAAATGGTGTTGGTTCATTTGGGTCAGAGATTCGCCCAGTGGAACCATCTAATCAGGGATTTGGAGCAATAAATGGTGTTGGTTCATTTAGGTCAGAGGTTCATCCAGTGGGACCATCTAATCAAGGATTTGAAGCAACAAATGGTGTTGGCTCGTTAGGGTCAGAGATTCATCCTGTGGAACCATCTAATCAAGAATTTGGAGCAATACAGTTGCCGTTACCTGAACTGAACCAAACTTGTGAGCCTTACAACTGCAATGCCAATGTTAATGCCTATACTTTGAACCAGGCACCACTTCACCAATTGAACTCCTGCTTCTCTAATGGTTTTCCAATACCTAGTTCTGAACCAATCTACAATGGTTCCCAAATTCAGGCGACTGAAAGTCAAATTGATTTGGACATGCGAAATTATCTCAACAGATCTTACATAGAAGACAATGATTTCGCCTGTGATTTTGATATATTTGGGACATCAAATGGGGCTAGACAAGGCCTCTAG 2193 0.4305 MEEFPSLIEGPKNIEPTMSRDWSQESAGIPHNTLITPHIGTSSHSQDSVNNLTNCSNHIGDLESLLEAILDEKHIEECLIRSKLLSYQIGPNATNEGEQNDPTKTISSRSSVYRGVTKAKEDRFEAFVWDNTDPEGRGKTVYIGAFANEIDAARAHDMVSIKIGGLNTLTNFPVRCYWRELEEIQSMSKKEYIEAVRRRGKGFTDMETPFRGVYRIGESRKWEARLSREGFPTINLGIYYTAEDAARAYDILSIKLKGYDAVTNFDLHSYEVAGIMECVVAQQTDGSVVLQMVGSNNETEANPQNSSLDQNNPQNSSLNQNNPQQPGNSSFSHGSQNPNLISNNPCTQGNSSLSHGSQNPNLISSNPCTQGNSSLSHGSQNPNLIPSIPCTLGNASFSHGSQSSNLISSNPYTLGGFTGGAGTSGNTIFNHGGEFPTLNATLQQPLQTQYQVNVNNSYNQNLLINNNQFLLQSCSIPLLARSTQNLDLEKCLHFPDWPSGFGKQLLGGNVELEPVPVSNTTTPNVQHQTHGVLVSENTRAINGVGSFGSEIRPVEPSNLGFGAINGVGSFGSEIRPVEPSNQGFGAINGVGSFRSEVHPVGPSNQGFEATNGVGSLGSEIHPVEPSNQEFGAIQLPLPELNQTCEPYNCNANVNAYTLNQAPLHQLNSCFSNGFPIPSSEPIYNGSQIQATESQIDLDMRNYLNRSYIEDNDFACDFDIFGTSNGARQGL 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01993 730 ProSiteProfiles AP2/ERF domain profile. 112 173 IPR001471 GO:0003700|GO:0006355
Cca03g01993 730 SUPERFAMILY DNA-binding domain 111 174 IPR016177 GO:0003677
Cca03g01993 730 MobiDBLite consensus disorder prediction 1 25 - -
Cca03g01993 730 ProSiteProfiles AP2/ERF domain profile. 209 266 IPR001471 GO:0003700|GO:0006355
Cca03g01993 730 Gene3D AP2/ERF domain 209 268 IPR036955 GO:0003700|GO:0006355
Cca03g01993 730 Gene3D AP2/ERF domain 112 175 IPR036955 GO:0003700|GO:0006355
Cca03g01993 730 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 95 344 - -
Cca03g01993 730 MobiDBLite consensus disorder prediction 90 109 - -
Cca03g01993 730 MobiDBLite consensus disorder prediction 297 380 - -
Cca03g01993 730 SMART rav1_2 209 272 IPR001471 GO:0003700|GO:0006355
Cca03g01993 730 SMART rav1_2 112 179 IPR001471 GO:0003700|GO:0006355
Cca03g01993 730 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL7 95 344 - -
Cca03g01993 730 CDD AP2 111 174 IPR001471 GO:0003700|GO:0006355
Cca03g01993 730 SUPERFAMILY DNA-binding domain 210 267 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01993 Cca-Chr3 39998294 40003973 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01993 99 277 AP2-EREBP Transcription Factor Family AT5G17430 42.553 1.34e-41 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01993 K09285 - pvu:PHAVU_001G137500g 418.698