Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01992 ATGGCTACTCCTATACTCTGTACATACCTATTCCTTCTCTCTTTGACCTTTCCAATCTTGAGCCTTTCTTCATCTTCATCAGAAGGGGACATTCTTCTCTCCTTCAAGTCCTCCATTGAAGACTCTAAGAAGGCCTTGTCAAGTTGGTCCAACACTTCCTCAAACCACCACTGTAACTGGACTGGAATCACATGTTCCGCCACACCTTCACTCTCAGTAACTTCCATCAACCTTCAAAGCCTGAACCTTTCCGGGGATATATCATCTTCCATATGTGACCTTCCCAATTTGTCTTATCTCAACCTTGCTGATAACATCTTCAACCAGCCCATACCTCTTCATCTCTCTCAGTGCAGTTCCTTGGAGACTTTGAATCTCAGTACTAATCTCATTTGGGGCACTGTCCCTTCTCAGATTTCTCAGTTTGCTTCTTTGATAGTGCTTGATTTGAGCAGAAACCACATAGAGGGAAACATCCCTGAAAGCTTAGGATTCTTGAAGAACCTTAAAGTCCTCAACATGGGGAGCAACTTGATCTCAGGTAATGTTCCTGCTGTGTTTCGCAATCTAACCAAACTTGAAGTGCTTGATTTGTCTCAGAATCCATACTTGGTGAGTGAGATTCCAGAAGATATTGGTGAGCTTGGAAATCTGAAGCAGCTTCTGTTGCAAAGCTCTTCTTTTCAAGGTGAAATTCCCGAGTCTCTGGTGGGCCTGGTTGGTTTGACCCATTTAGATCTCTCTGAGAATAACCTAACAGGTGGGGTTCCTAAGGCTCTACCATCTTCTCTCAAGAACCTGGTTTCATTAGATATTTCACAAAACAAACTTTTGGGGCTGTTTCCGAGTGGTATCTGCAAGGGGCAAGGACTTATAAATCTCAGTCTCCACACAAATGCCTTCACTGGCTCAGTGCCTAACTCCATTGGTGAGTGTAAGAGTCTTGAGAGATTCCAAGTCCAGAACAACGGTTTCTCTGGAGATTTCCCCATTGCATTGTGGTCACTACCCAATATTAAGCTCATCAGAGCTGAAAACAACAGATTTTCAGGACAGATACCTGAGTCAATTTCCGGAGCTGTTCAGTTGGAGCAAGTTCAGCTTGACAACAACAGCTTTGGTGGTAAAATTCCTCAAGGTCTTGGCCTTGTCAAGAGCTTATACAGATTTTCTGCCTCTCTCAACCGTCTCTATGGTGAACTTCCTCCAAACTTTTGTGACTCTCCTGTTATGAGCATAGTTAATCTCTCCCGGAATTCTCTTTCTGGTCAAATCCCTGAGCTGAAAAAATGCAGGAAACTAGTTTCATTGTCTTTGGCTGATAACAGTCTAACAGGAGAAATGCCAGCTTCCCTTGCTGAACTACCTGTGCTTACTTACCTTGATCTTTCAGATAACAATCTCACTGGTTCAATCCCACAAGCGCTTCAGAACTTGAAGCTTGCTCTTTTCAATGTTTCCTTCAATCAGCTGTCAGGTAAAGTACCATACTCCTTGATTTCTGGTCTCCCTGCCTCATTTTTGGAAGGAAACCCTGGTCTCTGTGGCCCTGGATTGCCTAATACTTGTTCTGATGACATGCCAAGACACCACATTGGTGGCCTTACAACCTTAGCATGTGCCCTAATCTCTTTAGCTTTTGTTGCTGGAACTGCTATTGTTGTTGGTGGATTTATATGGTATAGGAGATCTTGCAAGGAGAATCAAGTAGGGGTTTGGCGCTCAGTGTTCTTCTACCCTCTTAGAATTACTGAGCATGATCTGCTTGTAGGGATGAATGAGAAAAACTCACTGGGAAATGGTGGGGTTTTCGGTAAAGTTTATGTTGTGAGTTTGCCGAGTGGTGAACTAGTAGCTGTGAAAAAGTTGGTTAATTTTGGAAACCAGTCCTCAAAAAGTTTGAAAGCTGAGGTCAAGACTTTGGCAAAAATTAGGCATAAGAATGTTGTTAAAATTTTGGGGTTCTGCCACTCTGATGAGTCAGTGTTTCTCATTTATGAGTACTTGCATGGAGGGAGCTTAGGGGATTTGATTTCTCGTCAGGATTTTCAGTTGCAGTGGAGAATTCGATTGAGAATTGCCATTGGAGTTGCTCAAGGACTGGCGTATCTTCACAAGGATTATGTTCCTCACTTGCTTCACAGAAATGTCAAGTCAAGTAACATTTTGTTGGATGCAAACTTTGAGCCAAAACTCACAGATTTTGCTCTTGATCGTGTCGTGGGAGAAGCTGCATTTCAATCAGTTTTGAACTCTGAAGCAGCATCTTCATGTTACATTGCACCAGAAAATGGTTATAGCAAGAAAGCAAGTGAACAATTGGACATCTATAGCTTTGGGGTAGTATTGCTAGAGCTAGTGAGTGGCAGGCAAGCAGAGCAAACAGAGTCAAGTGACTCACTTGACATTGTGAAGTGGGTTAGAAGGAAAGTGAATATCACTAATGGGGTGCATCAAGTTCTTGACCCTAAAATATCACAAACATGTCGCAGAGAAATGATTGGAGCTTTAGATATTGCACTTCGTTGCACTTCTGTGGTGCCTGAGAAAAGGCCATCCATGGTAGAAGTTGTTAGAGGCCTTCAATCCCTGGAGTCAAGAACTTGCATTGCAAATATACATGAACCAAATGAGGAACCCTCCATTCCAGTATGA 2655 0.4282 MATPILCTYLFLLSLTFPILSLSSSSSEGDILLSFKSSIEDSKKALSSWSNTSSNHHCNWTGITCSATPSLSVTSINLQSLNLSGDISSSICDLPNLSYLNLADNIFNQPIPLHLSQCSSLETLNLSTNLIWGTVPSQISQFASLIVLDLSRNHIEGNIPESLGFLKNLKVLNMGSNLISGNVPAVFRNLTKLEVLDLSQNPYLVSEIPEDIGELGNLKQLLLQSSSFQGEIPESLVGLVGLTHLDLSENNLTGGVPKALPSSLKNLVSLDISQNKLLGLFPSGICKGQGLINLSLHTNAFTGSVPNSIGECKSLERFQVQNNGFSGDFPIALWSLPNIKLIRAENNRFSGQIPESISGAVQLEQVQLDNNSFGGKIPQGLGLVKSLYRFSASLNRLYGELPPNFCDSPVMSIVNLSRNSLSGQIPELKKCRKLVSLSLADNSLTGEMPASLAELPVLTYLDLSDNNLTGSIPQALQNLKLALFNVSFNQLSGKVPYSLISGLPASFLEGNPGLCGPGLPNTCSDDMPRHHIGGLTTLACALISLAFVAGTAIVVGGFIWYRRSCKENQVGVWRSVFFYPLRITEHDLLVGMNEKNSLGNGGVFGKVYVVSLPSGELVAVKKLVNFGNQSSKSLKAEVKTLAKIRHKNVVKILGFCHSDESVFLIYEYLHGGSLGDLISRQDFQLQWRIRLRIAIGVAQGLAYLHKDYVPHLLHRNVKSSNILLDANFEPKLTDFALDRVVGEAAFQSVLNSEAASSCYIAPENGYSKKASEQLDIYSFGVVLLELVSGRQAEQTESSDSLDIVKWVRRKVNITNGVHQVLDPKISQTCRREMIGALDIALRCTSVVPEKRPSMVEVVRGLQSLESRTCIANIHEPNEEPSIPV 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01992 884 Gene3D Phosphorylase Kinase; domain 1 586 668 - -
Cca03g01992 884 SUPERFAMILY Protein kinase-like (PK-like) 596 860 IPR011009 -
Cca03g01992 884 Gene3D Ribonuclease Inhibitor 205 260 IPR032675 -
Cca03g01992 884 Gene3D Transferase(Phosphotransferase) domain 1 669 878 - -
Cca03g01992 884 Gene3D Ribonuclease Inhibitor 24 204 IPR032675 -
Cca03g01992 884 ProSiteProfiles Protein kinase domain profile. 593 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01992 884 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Cca03g01992 884 PRINTS Leucine-rich repeat signature 242 255 - -
Cca03g01992 884 PRINTS Leucine-rich repeat signature 264 277 - -
Cca03g01992 884 CDD STKc_IRAK 598 864 - -
Cca03g01992 884 SUPERFAMILY L domain-like 26 303 - -
Cca03g01992 884 SUPERFAMILY L domain-like 206 519 - -
Cca03g01992 884 SMART LRR_typ_2 166 189 IPR003591 -
Cca03g01992 884 SMART LRR_typ_2 94 118 IPR003591 -
Cca03g01992 884 SMART LRR_typ_2 190 215 IPR003591 -
Cca03g01992 884 SMART LRR_typ_2 239 262 IPR003591 -
Cca03g01992 884 SMART LRR_typ_2 455 478 IPR003591 -
Cca03g01992 884 SMART LRR_typ_2 264 288 IPR003591 -
Cca03g01992 884 Pfam Leucine rich repeat 432 491 IPR001611 GO:0005515
Cca03g01992 884 Pfam Leucine rich repeat 217 277 IPR001611 GO:0005515
Cca03g01992 884 Pfam Leucine rich repeat 145 202 IPR001611 GO:0005515
Cca03g01992 884 Gene3D Ribonuclease Inhibitor 261 531 IPR032675 -
Cca03g01992 884 Pfam Protein kinase domain 594 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01992 884 PANTHER OSJNBB0022F23.6 PROTEIN 8 872 - -
Cca03g01992 884 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 8 872 - -
Cca03g01992 884 ProSiteProfiles Leucine-rich repeat profile. 457 480 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01992 Cca-Chr3 39970819 39974533 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01992 32 864 Receptor kinase-like Gene Family AT5G06940 65.155 0.0 1080
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca03g01992 Pkinase 3.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01992 - - gmx:100794428 1555.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01992 03 39970819 39974533 Cca03g01992 03 39970819 39974533 ECH