Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01991 ATGGAGTCTCACGATGAGACTGGATGCCAGGCTCCTGAACGTCCTATTCTTTGCATTAATAATTGTGGCTTCTTTGGAAGAGCAGCTACCATGAACATGTGTTCCAAGTGTTACAAGGACATGCTGTTGAAGCAGGAGCAGGACAAACTTGCAGCATCGTCAGTTGAAAACATTGTGAATGGAAGTTCCAGTGGCAATGGGAAGCAAGCTGTGACTACAGGTGCGGTTGATGTACAAGTTGAAACTGTTGAGGTCAAGACTGTTTGTGTCCAGACTTCTGCAGATTCCTCTTCTGGTGAGAGTGTGGAGATGAAAGCCAAAACTGGTCCTAGTAGATGCGCCACATGTCAGAAACGTGTTGGATTAACTGGTTTTAGCTGCAAATGTGGCAACCTCTTCTGTGCAATACATCGCTATTCCGATAAACATGACTGCACTTATGACTATAGGACTGTTGGTCAGAGTGCCATAGCTAAAGCCAATCCAGTAATTAAGGCAGACAAGGTTGACAAAATCTAG 519 0.447 MESHDETGCQAPERPILCINNCGFFGRAATMNMCSKCYKDMLLKQEQDKLAASSVENIVNGSSSGNGKQAVTTGAVDVQVETVEVKTVCVQTSADSSSGESVEMKAKTGPSRCATCQKRVGLTGFSCKCGNLFCAIHRYSDKHDCTYDYRTVGQSAIAKANPVIKADKVDKI 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01991 172 SUPERFAMILY AN1-like Zinc finger 103 167 IPR035896 -
Cca03g01991 172 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 55 - -
Cca03g01991 172 PANTHER AN1-TYPE ZINC FINGER PROTEIN 2 172 - -
Cca03g01991 172 SMART AN1_Zf_4 113 150 IPR000058 GO:0008270
Cca03g01991 172 Gene3D - 87 168 IPR035896 -
Cca03g01991 172 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
Cca03g01991 172 Pfam AN1-like Zinc finger 113 149 IPR000058 GO:0008270
Cca03g01991 172 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 8 2 172 - -
Cca03g01991 172 Gene3D - 1 64 - -
Cca03g01991 172 Pfam A20-like zinc finger 16 39 IPR002653 GO:0003677|GO:0008270
Cca03g01991 172 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
Cca03g01991 172 ProSiteProfiles Zinc finger AN1-type profile. 107 153 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01991 Cca-Chr3 39948224 39950879 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01991 5 172 C2H2 Transcription Factor Family AT3G52800 42.012 8.59e-41 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01991 - - gmx:100499995 324.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01991 03 39948224 39950879 Cca03g01991 03 39948224 39950879 ECH
Cca03g01991 03 39948224 39950879 Cca10g00363 10 3831539 3831967 ECH
Cca03g01991 03 39948224 39950879 Cca04g00564 04 5663690 5664091 ECH