Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01990 ATGGCGCAGAAGAAGAAAGCTAGGGTTTCCGACGACGAAGAAATGGAAGTGCAGCACGATCAAACCAGCCTCTACCAGGTTCTTGGTGTGGAGAGAACGGCGTCTCAGCACGAGATAAAGAAGGCGTACCACAAGTTGGCGTTGCGGCTTCATCCTGATAAGAACCCTGGTGATGAGGGAGCTAAAGAGAAATTTCAGCAGCTGCAAAAAGTGATATCGATTCTCGGGGATGAAGAGAAGCGGGCGCTGTATGATCAGACTGGTTGTGTTGACGATGCTGACCTTGCTGGAGATGTTGTTCAGAATCTTCAAGAGTTCTTCAGAACAATGTACAAGAAGGTCAGTGAAGCTGATATTGAGGAGTTTGAAGCGAACTACAGGGGTTCTGACTCAGAAAAATGA 402 0.4751 MAQKKKARVSDDEEMEVQHDQTSLYQVLGVERTASQHEIKKAYHKLALRLHPDKNPGDEGAKEKFQQLQKVISILGDEEKRALYDQTGCVDDADLAGDVVQNLQEFFRTMYKKVSEADIEEFEANYRGSDSEK 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01990 133 MobiDBLite consensus disorder prediction 1 19 - -
Cca03g01990 133 Pfam DnaJ domain 24 85 IPR001623 -
Cca03g01990 133 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 3 133 IPR042977 -
Cca03g01990 133 PRINTS DnaJ domain signature 25 43 IPR001623 -
Cca03g01990 133 PRINTS DnaJ domain signature 80 99 IPR001623 -
Cca03g01990 133 PRINTS DnaJ domain signature 60 80 IPR001623 -
Cca03g01990 133 PRINTS DnaJ domain signature 43 58 IPR001623 -
Cca03g01990 133 CDD DnaJ 25 77 IPR001623 -
Cca03g01990 133 SMART dnaj_3 22 80 IPR001623 -
Cca03g01990 133 MobiDBLite consensus disorder prediction 1 21 - -
Cca03g01990 133 SUPERFAMILY Chaperone J-domain 19 97 IPR036869 -
Cca03g01990 133 PANTHER CHAPERONE DNAJ DOMAIN PROTEIN 3 133 - -
Cca03g01990 133 ProSiteProfiles dnaJ domain profile. 23 88 IPR001623 -
Cca03g01990 133 Gene3D DnaJ domain 5 102 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01990 Cca-Chr3 39929645 39931182 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01990 6 86 Miscellaneous Gene Families AT1G16680 34.940 7.43e-09 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01990 K09529 - gmx:100793909 252.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01990 03 39929645 39931182 Cca03g01990 03 39929645 39931182 ECH
Cca03g01990 03 39929645 39931182 Cca02g00792 02 21319637 21334355 PCT