Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01988 ATGTATGATTTGCTTCTGGAGGTTTCCATGGAGACAGAGAACGGTGACACGAGGTCCAAAAAGATGGAAGATTACGAAGTGATTGAGCAAATTGGAAGAGGGGCTTTTGGCTCTGCCTTCCTCGTCCTTCACAAGTCCGAGAAAAAGAGGTATGTGCTGAAGAAGATTCGGTTGGCCAAGCAGACAGAGAAGTTCAAACGTACAGCACACCAAGAGATGAACCTGATTGCAAAACTGAATAACCCATATATTGTGGAGTACAAAGAAGCTTGGGTGGAGAAGGAGGACCATATATGCATTATAACTGGCTATTGTGAAGGAGGTGACATGGCTGAGAACATAAAGAAAGCTCGAGGGTCATTTTTTCCTGAGGAGAAGCTCTGCAAATGGCTGACTCAGTTGCTGATAGCTGTGGACTACTTGCACTCTAATCGTGTAATCCACAGAGATCTTAAGTGTTCCAACATATTCCTCACCAAAGACAACAACATTCGGCTTGGTGACTTTGGTCTTGCAAAGCGACTCAATGCAGAAGACCTTGCTTCCTCGGTTGTTGGAACTCCAAATTACATGTGTCCTGAGCTCCTCGCTGATATACCTTATGGCTATAAATCTGATATGTGGTCTCTTGGTTGCTGCATGTTTGAGATTGCTGCACATCAACCAGCATTTCGTGCTCCAGACATGGCTGGACTTATCAATAAAATAAACAGATCTTCCATTTCTCCACTGCCAATTGTTTATTCATCCACACTGAAGCAACTTATCAAGAGCATGCTTAGGAAAAACCCAGAACATAGGCCAACCGCAGCTGAATTGTTAAGGCATCCGCTTTTACAACCCTATGTTCTTCGCTGTCATAATGCATCATCTAATTTTCTTCCAGTATATCCCTTAGTAAATTCAAAGGATAAAACAAGAAGATCTAATAAATCTAGCGGTGGCAAGGACCATAAGGACAAAGAAGCAGGATTAGTAAATCGTTTGGAACGGGTTCATCCAATTGAGGGAAATGGAGATATACAGATAAGCAATCTTCCTAATGATGCAGTAACAATCTCAACCACTGCAGAAGACAGTCTTGAGACCAGGATGGTTGATCTTACCAGCTACATAGTAGAATCTTCTACAAGTATTAGTGGCTCAAAAGATGGGTCAACAACATCTGAATCAACTATTTGCAGTGTGTGCAAGGAGGACTTCAAAAGTAGACCTGCAAGAGAAACAGTTAATAATGAGATCTCCTCAAAGAGTACACAAGATTCTCTGCATGAAGAACAAGGAATTGATGCTAAACATTTTCATAAATTAGAAGACAACATAAATGCAGTGACCACAGAAGTTGAAGATGCTTCTTGCAATGAAGGTTTGGATAATGCTGAAGCACAGAGGGAAGATGTTAACCTTGAGGACTCTAGTAAATCAACGACGTCCAGTGAAGGCAGTAGCAGCATTGATAAAGATAAGTCCGTTAATGAGGAAAGGTCATCGCTAATTGTGCATCAACACGACACTGAACTTGGAAAATGCTTGAAGGAAAATGAAAACTCTGATGTATTTACAGAAGGCTCACATATGAACTGCTTGTCATCAGATAGTAATGATGCACTTCCAGTTAAGGATAATGACACAACAAACAGACACATTATTCACTCCACACATAAAGAACACGATAATGCAGTGGAGGTCGATCAGACACCTAGTGGTGTTTCATTGAGTGTAATAACTGATGTAGGTGATGATGAAACAACCAAGTCTGTGTTGGATAGTCCCTGCCAGCAAAGAGCTGATGCTCTAGAATCTCTACTTGAGTTATGTGCTCAGCTACTTAAGCAAGATAAACTTGAAGAGCTTGCTGGGGTGCTAAAACCATTTGGGAAAGAAGCTGTCTCATCAAGAGAAACAGCAATATGGCTGGCAAAAAGCCTCATATCTGCCCAAAAATTTAATCCTGAAACCTAG 1962 0.4128 MYDLLLEVSMETENGDTRSKKMEDYEVIEQIGRGAFGSAFLVLHKSEKKRYVLKKIRLAKQTEKFKRTAHQEMNLIAKLNNPYIVEYKEAWVEKEDHICIITGYCEGGDMAENIKKARGSFFPEEKLCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKDNNIRLGDFGLAKRLNAEDLASSVVGTPNYMCPELLADIPYGYKSDMWSLGCCMFEIAAHQPAFRAPDMAGLINKINRSSISPLPIVYSSTLKQLIKSMLRKNPEHRPTAAELLRHPLLQPYVLRCHNASSNFLPVYPLVNSKDKTRRSNKSSGGKDHKDKEAGLVNRLERVHPIEGNGDIQISNLPNDAVTISTTAEDSLETRMVDLTSYIVESSTSISGSKDGSTTSESTICSVCKEDFKSRPARETVNNEISSKSTQDSLHEEQGIDAKHFHKLEDNINAVTTEVEDASCNEGLDNAEAQREDVNLEDSSKSTTSSEGSSSIDKDKSVNEERSSLIVHQHDTELGKCLKENENSDVFTEGSHMNCLSSDSNDALPVKDNDTTNRHIIHSTHKEHDNAVEVDQTPSGVSLSVITDVGDDETTKSVLDSPCQQRADALESLLELCAQLLKQDKLEELAGVLKPFGKEAVSSRETAIWLAKSLISAQKFNPET 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01988 653 Coils Coil 434 454 - -
Cca03g01988 653 Gene3D Transferase(Phosphotransferase) domain 1 107 338 - -
Cca03g01988 653 MobiDBLite consensus disorder prediction 304 324 - -
Cca03g01988 653 MobiDBLite consensus disorder prediction 404 426 - -
Cca03g01988 653 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Cca03g01988 653 ProSiteProfiles Protein kinase domain profile. 25 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01988 653 Gene3D Phosphorylase Kinase; domain 1 6 104 - -
Cca03g01988 653 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 19 493 - -
Cca03g01988 653 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 502 636 - -
Cca03g01988 653 CDD STKc_Nek 24 279 - -
Cca03g01988 653 SMART serkin_6 25 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01988 653 SUPERFAMILY Protein kinase-like (PK-like) 22 309 IPR011009 -
Cca03g01988 653 MobiDBLite consensus disorder prediction 460 492 - -
Cca03g01988 653 Pfam Protein kinase domain 25 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01988 653 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 19 493 - -
Cca03g01988 653 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 502 636 - -
Cca03g01988 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01988 Cca-Chr3 39905634 39911201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01988 18 280 MAP Kinase Kinase Kinase AT3G13530 32.075 3.20e-37 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Cca03g01988 Pkinase 3.9e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01988 K08857 - gmx:100793379 1125.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01988 03 39905634 39911201 Cca03g01988 03 39905634 39911201 ECH