Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01986 ATGGCTGACCCCTACTCCAATTTCTTCTCTTCCTCTCCCTTCTTCCGTTTCAACCACCACCATTTCCCATCTTCAACTAGCCCTTCTCCCCAACACCACAACTTCATCAAAACCAACGACACCGCAACCTTTTTCCACTACCACCACGCCGCAACAACTTTTTCTTCTCTGCCACCTTCTTCCCCTCCTCTCAGAGAAGAACTACCCCTCCTGCGGCTGAGCCCGCCGAAGCAAGAGGAGGAGGAGGACGACCCCTCTTGCACCGGAGCCATGGAAGTGGAGGAGGGGATCCACAATATCCACCCCAAGGAGGAGGAAGAAGATGATGAAGATGGTACTGTCACTGTTGCACTCCACATAGGCTTGCCAAGCCCTAGTGCTGCTGAGATGGCTTCTGTCCTCTCTTCTTCCTCCGAAATCACTGACAAAGAACATGGTGATGGTGCTCATGCTCAGGATTCTTCTGCACCCTTCAGACTCAACAAGGGCCAGTACTGGATCCCTACCCCTTCTCAGATTCTCATTGGTCCTACTCAGTTCTCTTGCCCTGTTTGTTGCAAAACTTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGACCTGAGTCTCTGAGGGGTACCCAACCAACGGGCATGCTGAGGCTTCCTTGCTATTGTTGTGCCCCAGGGTGCAGAAACAACATTGACCACCCAAGAGCAAAGCCTCTCAAAGACTTTAGAACACTTCAAACGCATTACAAGAGGAAGCATGGGATCAAGCCCTTCATGTGCAGGAAATGTGGCAAGGCTTTTGCTGTGAGAGGAGATTGGAGAACTCATGAGAAGAACTGTGGCAAGCTTTGGTACTGCATCTGCGGCTCCGATTTCAAGCACAAGAGGTCTCTTAAAGACCACATTAAAGCTTTTGGAAGTGGCCATGCAGCTTATGGGATCGATGGATTCGAAGAGGAAGATGAGCCAGCATCTGAAGTAGAGCAAGATAATGATTCCACCCAGTAA 1026 0.499 MADPYSNFFSSSPFFRFNHHHFPSSTSPSPQHHNFIKTNDTATFFHYHHAATTFSSLPPSSPPLREELPLLRLSPPKQEEEEDDPSCTGAMEVEEGIHNIHPKEEEEDDEDGTVTVALHIGLPSPSAAEMASVLSSSSEITDKEHGDGAHAQDSSAPFRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEVEQDNDSTQ 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01986 341 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 341 - -
Cca03g01986 341 SUPERFAMILY beta-beta-alpha zinc fingers 246 284 IPR036236 -
Cca03g01986 341 ProSitePatterns Zinc finger C2H2 type domain signature. 182 202 IPR013087 -
Cca03g01986 341 Gene3D Classic Zinc Finger 242 317 - -
Cca03g01986 341 SMART c2h2final6 180 202 IPR013087 -
Cca03g01986 341 SMART c2h2final6 264 284 IPR013087 -
Cca03g01986 341 PANTHER ZINC FINGER PROTEIN WIP2 1 341 IPR043584 GO:0003700|GO:0010468
Cca03g01986 341 ProSiteProfiles Zinc finger C2H2 type domain profile. 264 284 IPR013087 -
Cca03g01986 341 MobiDBLite consensus disorder prediction 132 155 - -
Cca03g01986 341 Gene3D Classic Zinc Finger 179 202 - -
Cca03g01986 341 ProSiteProfiles Zinc finger C2H2 type domain profile. 180 207 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01986 Cca-Chr3 39856311 39859153 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01986 1 338 C2H2 Transcription Factor Family AT3G57670 63.325 8.37e-146 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca03g01986 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01986 - - gmx:100802907 558.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01986 03 39856311 39859153 Cca03g01986 03 39856311 39859153 ECH
Cca03g01986 03 39856311 39859153 Cca10g00366 10 3854408 3856690 ECH
Cca03g01986 03 39856311 39859153 Cca04g00568 04 5701247 5703785 ECH
Cca03g01986 03 39856311 39859153 Cca02g00800 02 21646586 21649311 PCT