Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01979 ATGGGGAGTAAGAAGAAGGCATCGCCTCTCTCATTGCAGCAATTCATCTCCATCACCGCTCCTCTTCTTGACTTGGAAAAGGATGCTGAGATTTCAAGCTCAATCGCCATCGGCGCCTCCAGGAACTTGGACACCGCTCAAAAGAGGGGTTCCACCATCCTCAACTTGAAGTGCGTCGATGTCCAGACAGGGCTCATGGGGAAGTCTCTGATTGAGTTCCAGTCTACAAAAGGAGATGTTCTTCCTGCACACAAGTTTAGTACTCATGATGTCGTCGTTTTAAAACTCAACAAGTCTGATTTAGGTTCTCCTGCTCTTGGTCAAGGTGTAGTTTACAGATTAAAGGATTCGTCAATAACTGTTGCTTTTGATGATATACCAGAAGATGGTTTAAACAGTCCCCTAAGGCTGGAAAAAGTAGCAAATGAGGTGACATATCGCAGGATGAAAGATGCACTGATACAATTGAGTAAAGGAGTGCACAAGGGTCCTGCCTCTGATCTGATTCCTGTCTTGTTTGGGGAGAGGCCACCGACAGTGTCAAAGAAGGATGTATCCTTCTCTCCCTTTAATATCAATCTTGATCATTCCCAGAAAGAAGCGGTTTCAAAAGCTCTATCATCAAAGAATGCATTCTTGCTGCATGGGCCTCCTGGAACGGGAAAAACTACAACAGTTGTAGAAATTATATTACAAGAAGTGAAACGTGGATCTAAGATTCTTGCTTGTGCTGCTTCAAATATTGCTGTTGATAACATTGTTGAGCGGCTAGTTCCACATAGAGTTAAGCTGGTGAGACTCGGTCATCCTGCACGGTTATTGCCTCAAGTACTGGACAGTGCGCTGGATGCTCAGGTACTACGAGGAGATAATAGTGGTCTTGCAAATGACATTCGGAAAGAAATGAAGGCATTGAATGGAAAGCTTCTGAAAACCAAAGACAGAAATACGAGAAAGGACATACAAAGGGAACTTAGGACTCTATCCAAAGAAGAACGTAAAAGGCAGCAGCTTGCTGTAACAGATGTACTCAAGTGTGCAGATGTAATATTAACTACTTTGATTGGGGCTTTCTCTAAGAAACTAGACAGCACTTCATTTGATTTGGTGATTATTGATGAAGCAGCTCAAGCACTTGAGATAGCATGCTGGATACCTCTGCTGAAGGGTTCAAGATGTATACTTGCAGGGGACCATCTTCAACTTCCTCCAACCATTCAAAGTGTTGAAGCTGAGAAGAAAGGCTTAGGAAGAACACTCTTTGAACGTCTTGCAGACATGTATGGAGACGAAATCACATCAATGCTTACTGTCCAGTACCGCATGCATGAACTTATCATGGATTGGTCTTCTAAAGAGCTTTACGACAGTAAGATCAAGGCTCATCCAAGTGTTGCTGCACATATGTTATATGATCTTGAGGGTGTGAAGCGGACAACTTCATCTGAACCAACCCTTCTTCTCATAGACACAGCTGGATGTGATATGGAAGAAAAGAAAGATGAAGAAGATAGCACCTTTAATGAAGGCGAAGCTGAGGTTACCGTGGCTCATGCAAAGAGACTAGTGCAGAGTGGGGTGCTTCCTTCTGATATTGGAATTATTACCCCATATGCTGCCCAGGTTGTTTTGCTCAAGATGTTGAAAAACAAGGAGGACCGGCTGAAGGATGTTGAAATCTCAACAGTTGATGGTTTCCAGGGAAGGGAGAAGGAAGCCATTATTATATCAATGGTTCGATCAAATTCAAAAAAAGAGGTTGGCTTTCTGAGTGATCGCCGGCGAATGAATGTGGCTGTGACACGGTCTAGAAGGCAATGCTGTCTTGTCTGTGACACAGAGACAGTCAGTGGTGATGGATTTCTGAAGCGATTGATTGAGTATTTTGAGGAGCATGGCGAGTATCTGAGTGCATCTGAGTACCAGAATGAGTAG 1935 0.4357 MGSKKKASPLSLQQFISITAPLLDLEKDAEISSSIAIGASRNLDTAQKRGSTILNLKCVDVQTGLMGKSLIEFQSTKGDVLPAHKFSTHDVVVLKLNKSDLGSPALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKVANEVTYRRMKDALIQLSKGVHKGPASDLIPVLFGERPPTVSKKDVSFSPFNINLDHSQKEAVSKALSSKNAFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVKLVRLGHPARLLPQVLDSALDAQVLRGDNSGLANDIRKEMKALNGKLLKTKDRNTRKDIQRELRTLSKEERKRQQLAVTDVLKCADVILTTLIGAFSKKLDSTSFDLVIIDEAAQALEIACWIPLLKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLADMYGDEITSMLTVQYRMHELIMDWSSKELYDSKIKAHPSVAAHMLYDLEGVKRTTSSEPTLLLIDTAGCDMEEKKDEEDSTFNEGEAEVTVAHAKRLVQSGVLPSDIGIITPYAAQVVLLKMLKNKEDRLKDVEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRSRRQCCLVCDTETVSGDGFLKRLIEYFEEHGEYLSASEYQNE 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01979 644 Pfam AAA domain 194 408 IPR041677 GO:0004386
Cca03g01979 644 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 9 642 - -
Cca03g01979 644 Coils Coil 295 315 - -
Cca03g01979 644 PANTHER HELICASE WITH ZINC FINGER 2 9 642 - -
Cca03g01979 644 TIGRFAM TIGR00376: putative DNA helicase 342 637 IPR004483 GO:0003677|GO:0005524
Cca03g01979 644 Gene3D - 38 140 - -
Cca03g01979 644 Pfam AAA domain 417 613 IPR041679 -
Cca03g01979 644 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 630 IPR027417 -
Cca03g01979 644 SMART AAA_5 208 460 IPR003593 -
Cca03g01979 644 CDD SF1_C_Upf1 442 630 IPR041679 -
Cca03g01979 644 CDD DEXXQc_SMUBP2 193 441 - -
Cca03g01979 644 SMART ultradead3 190 441 IPR014001 -
Cca03g01979 644 Gene3D - 21 424 IPR027417 -
Cca03g01979 644 Gene3D - 440 644 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01979 Cca-Chr3 39789656 39800051 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01979 193 377 Core DNA Replication Machinery Family AT1G08840 26.486 3.02e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01979 K19036 - gmx:100810545 1191.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01979 03 39789656 39800051 Cca03g01979 03 39789656 39800051 ECH