Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01978 ATGGATACTTGCAAGAAGTCATTGAAGCCATGGAAGAAAGGTCCAACCAGAGGGAAAGGTGGCCCCCAGAATGCCTCATGCCAGTACCGAGGTGTTCGGCAGAGAACATGGGGCAAATGGGTCGCTGAGATAAGAGAGCCAAAGAAGAGAACCAGACTCTGGCTTGGTTCTTTTGCCACAGCTGAAGAAGCTGCCATGGCTTATGATGAGGCTGCAAGGAGACTCTATGGACCAGACGCATACCTTAATCTCCCCCACATGCAACCCACTTCCACTTCACCATCAGGAAAGTTCAAATGGATTCCTTCCAAGAACTTCATTTCAATGTTTCCTTCCTATGGATTGCTCAACGTGAATGCTCAACCTAGTGTTCATTTAATCCACCAGAAGCTGCAAGAGCTTAAGCGAAATTCAGTTGTGAATCAATCCCCATCAAGTTCATCAAATGAACCAAAGGCAGAAACTCAGAATGTAAACAGCAAAAATGATGGAGAAGACCCTCTAAAAGATGCTCAAACATCATCAGAGGAGTTGCTTGGAGATCTTCAGGAGAAAGAGAAACCTCAGATAGACCTCCATGAGTTTCTTCAACAGCTGGGAATACTGAGAGAAGAAAGAGAGTTTGGAAGAACTGATAGCTCAGTAAGTTCCACAGTGCCTGAAGCTGTGTTGAGAGATGACAATGCTCATCAATTAGAAGTGTTTTCTGACAATTGTGTTAACTGGGAGGCATTGATTGAGATGCATGGAATTGCAGGTATTCATCAGGAATCAGAAGCCACACAGTTTGAAGCATATGACCCAAATGATGACCTTACTTTCTCAACATCCATTTGGAACTTTTAA 846 0.4385 MDTCKKSLKPWKKGPTRGKGGPQNASCQYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHMQPTSTSPSGKFKWIPSKNFISMFPSYGLLNVNAQPSVHLIHQKLQELKRNSVVNQSPSSSSNEPKAETQNVNSKNDGEDPLKDAQTSSEELLGDLQEKEKPQIDLHEFLQQLGILREEREFGRTDSSVSSTVPEAVLRDDNAHQLEVFSDNCVNWEALIEMHGIAGIHQESEATQFEAYDPNDDLTFSTSIWNF 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01978 281 MobiDBLite consensus disorder prediction 138 175 - -
Cca03g01978 281 Pfam AP2 domain 27 77 IPR001471 GO:0003700|GO:0006355
Cca03g01978 281 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2F 1 278 - -
Cca03g01978 281 MobiDBLite consensus disorder prediction 1 27 - -
Cca03g01978 281 Gene3D AP2/ERF domain 27 86 IPR036955 GO:0003700|GO:0006355
Cca03g01978 281 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Cca03g01978 281 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Cca03g01978 281 SUPERFAMILY DNA-binding domain 28 86 IPR016177 GO:0003677
Cca03g01978 281 MobiDBLite consensus disorder prediction 138 162 - -
Cca03g01978 281 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Cca03g01978 281 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 1 278 - -
Cca03g01978 281 CDD AP2 27 86 IPR001471 GO:0003700|GO:0006355
Cca03g01978 281 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01978 Cca-Chr3 39786263 39787603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01978 7 281 AP2-EREBP Transcription Factor Family AT3G57600 52.857 2.28e-87 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca03g01978 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01978 - - gmx:113001170 453.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01978 03 39786263 39787603 Cca03g01978 03 39786263 39787603 ECH