Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01975 ATGTTCTGCTCTTTGGTTTCTGGATGTTTGAAGAAGAGTAGAGGAACTTGGATGGTTGTAAGAGGAGCTGAGTCTCCTCCTGCAAATGAAAGTATGTGCTGTGAGTTGGAGCGGTTAAAGCCAGCACTATCTCCATCTCCGTTGCCTATTTTGATTTGCACATCTCAACCTAGAAGCCACGAGATGAATCACTTTTCTGTTGACACTGAAGATTCTTTTGCAAGCTTGCTTGAACTTGCAGCCAATAATGATGTTAAGGGTTTCAAACGATTGATTGAGTGTGATCCTTCCTCCGTAGACGAGGTTGGGCTATGGTATGGTCGCCGCAAGGGGTCAAAGCAGATGGTCAATGAGCAAAGAACTCCTTTGATGGTTGCTGCTACCTATGGTAGCATTGATATTATGAAACTCGTTCTTTCTCTATCTGATGCTGATGTTAACCGACCTTGTGGCCTTGACAGAAGCACTGCCCTTCATTGTGCGGCATCAGGTGGGGCTGAAAATGCTGTTGATGCTGTGAAACTGCTTTTGGAAGCAGGGGCTGATCCGAATTCTGTGGATGCCAACGGGCATCGTCCTGGAGATGTTATTGTTTTTCCTCCCAAGCTTGAACATGTTAAAAACAGTCTTGAGGAGCTTCTTCAAACTAATGATTCTATTGCTGGATGTAATCTTAGGGTTATCACAATCTCATCCAATGCATATTCACCACCCTTGTCAACCTCGCCGGAGATTGGGTCTCCTTCTGCTGCAGATTTCCAGCTTAAGTTGAAGTCTAATGACGCCCCTGTTTCTTCTGCATCTGAGAAGAAAGAGTATCCTGTTGATCCATCACTTCCTGACATCAAGAACAGCATATACTCAACTGATGAATTCCGAATGTATTCTTTCAAGGTTCGACCTTGTTCCCGTGCTTATTCACATGATTGGACTGAATGCCCTTTTGTTCATCCAGGGGAGAATGCTCGACGAAGGGATCCCAGAAAGTACCATTACAGCTGTGTTCCTTGTCCTGACTTTCGTAAGGGTGCTTGTAGGCGGGGAGACATGTGTGAATATGCTCATGGGGTTTTTGAATGCTGGTTGCATCCTGCACAGTATAGAACCCGACTGTGCAAGGATGGAACAAATTGTTCCAGAAGAGTTTGCTTCTTTGCCCACACTGCTGAAGAGCTTCGACCATTATATGTTTCAACTGGTTCTGCTGTTCCTTCTCCAAGATCAAGCACATCTTCTGCCATGGATTTTGCTGCAGCCATGAACATGTTGCCTGGCTCTCCTTCCTCGATGTCGGTCATGTCTCCTTCCCCGTTCACTCCTCCCATGTCACCTTCTGCCAATGGCATTTCACACTCTTCTGTCGCTTGGCCCCAGCCAAACATCCCAGCATTGCATCTTCCGGGAAGTAATCTCCAGTCTAGTCGTTTGAGATCTTCACTCAATGCTAGAGATATTCCTATGGATGATTTTGATATGTTACCTGATTTTGATCAGCAGCAACAGCTCCTTAATGAGTTATCATGCCTCTCTCCACAGCCAATAAATTCTAATACCActgaccttcaatacggctgcactgaacttcaatacggccttattgtgaaacctctgactccttcaaATCTTGATGATCTCTTTTCTGCTGAGAGTTCTTCTCCCCGATACGCTGATCCAACATTGACTTCAGCTGCCTCATATGGGGTTCAGGCATCAGGAAGAATGTCTCCGCGAAATGTGGAACCAATTTCTCCAATGGGTTCTAGGATTTCTATGCTAGCTCAGCGTGAGAAGCAACAATTTCGCAGCTTAAGCTCCCGGGAACTCGGCTCCAACTctgctgttgctgctgcagctgctgcctctgcCAATTCTTGGTCAAAATGGGGATCACCAAATGGTAAGTTGGATTGGCCTGTTGGTGCTGATGAAGTAGGTAAGCTCCGAAGGTCATCTTCATTTGAGCTCGGGAACAATGGTGAGGAGCCTGATTTATCGTGGGTCCAGTCACTTGTTAAAGAATCACCAACAGAAATTAAAGATAAATTGGCAACTAGTGTCTCAAATGTTGGAGCAGCTGGATCCTCCAATGAGGGATCAAATATGAGCACACAAATGGAGTCTGTTGATCATGCTGTACTGGGAGCATGGCTTGAACAGATGCAGCTTGATCATCTTGTGGCTCAGCAAAACTGA 2193 0.4341 MFCSLVSGCLKKSRGTWMVVRGAESPPANESMCCELERLKPALSPSPLPILICTSQPRSHEMNHFSVDTEDSFASLLELAANNDVKGFKRLIECDPSSVDEVGLWYGRRKGSKQMVNEQRTPLMVAATYGSIDIMKLVLSLSDADVNRPCGLDRSTALHCAASGGAENAVDAVKLLLEAGADPNSVDANGHRPGDVIVFPPKLEHVKNSLEELLQTNDSIAGCNLRVITISSNAYSPPLSTSPEIGSPSAADFQLKLKSNDAPVSSASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSSAMDFAAAMNMLPGSPSSMSVMSPSPFTPPMSPSANGISHSSVAWPQPNIPALHLPGSNLQSSRLRSSLNARDIPMDDFDMLPDFDQQQQLLNELSCLSPQPINSNTTDLQYGCTELQYGLIVKPLTPSNLDDLFSAESSSPRYADPTLTSAASYGVQASGRMSPRNVEPISPMGSRISMLAQREKQQFRSLSSRELGSNSAVAAAAAASANSWSKWGSPNGKLDWPVGADEVGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKDKLATSVSNVGAAGSSNEGSNMSTQMESVDHAVLGAWLEQMQLDHLVAQQN 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01975 730 ProSiteProfiles Ankyrin repeat profile. 153 188 IPR002110 GO:0005515
Cca03g01975 730 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 564 727 - -
Cca03g01975 730 PRINTS Ankyrin repeat signature 172 186 IPR002110 GO:0005515
Cca03g01975 730 PRINTS Ankyrin repeat signature 119 134 IPR002110 GO:0005515
Cca03g01975 730 SMART c3hfinal6 331 357 IPR000571 GO:0046872
Cca03g01975 730 SMART c3hfinal6 366 389 IPR000571 GO:0046872
Cca03g01975 730 SUPERFAMILY Ankyrin repeat 76 199 IPR036770 -
Cca03g01975 730 PANTHER UNKEMPT FAMILY MEMBER 62 563 IPR045234 -
Cca03g01975 730 PANTHER UNKEMPT FAMILY MEMBER 564 727 IPR045234 -
Cca03g01975 730 ProSiteProfiles Zinc finger C3H1-type profile. 336 358 IPR000571 GO:0046872
Cca03g01975 730 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 62 563 - -
Cca03g01975 730 Pfam Ankyrin repeats (3 copies) 79 187 IPR002110 GO:0005515
Cca03g01975 730 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 336 356 IPR000571 GO:0046872
Cca03g01975 730 Gene3D - 70 213 IPR036770 -
Cca03g01975 730 SMART ANK_2a 71 101 IPR002110 GO:0005515
Cca03g01975 730 SMART ANK_2a 153 185 IPR002110 GO:0005515
Cca03g01975 730 SMART ANK_2a 118 148 IPR002110 GO:0005515
Cca03g01975 730 ProSiteProfiles Ankyrin repeat region circular profile. 153 187 - -
Cca03g01975 730 Gene3D - 332 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01975 Cca-Chr3 39747810 39750552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01975 70 723 C2H2 Transcription Factor Family AT5G12850 49.787 0.0 625
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca03g01975 Ank_2 4.4e-11 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01975 - - ccaj:109796653 1363.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01975 03 39747810 39750552 Cca03g01975 03 39747810 39750552 ECH