Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01969 ATGGGAAACTGCTGCGCCACGCCCGCCACCGACGAGACCAAGAACAGGAAGAAGGGGAAGAAGGAGAACCCCTTCGCCATCGACTACGGCCTCGCCAACAACGCCGCCTCCAACGGGGCCAAGCTCACCGTCCTCAACTCTCCCACGGGCCGGGAGATCGGGGCCCGCTACGAGCTGGGCCGCGAGCTGGGCCGGGGGGAGTTCGGCGTCACCTACCTCTGCACGGACAAGGAGAGCGGGGAGGAGCTGGCCTGCAAGTCCATTTCCAAGAAGAAGCTGAGGACGGCGATCGACATCGAGGACGTCAGGAGGGAGGTGGAGATCATGCGCCACTTGCCGCACCACCCCAACATCGTCACGCTCAGGGATACTTACGAGGACGACAATGCCGTTCATCTTGTTATGGAGCTTTGCGAGGGCGGAGAGCTCTTCGATCGCATCGTCGCCCGCGGCCACTACACCGAACGCGCCGCCGCCGTCGTCACCCGGACCATTGTTCAAGTCGTTCAGATGTGCCACAAGCATGGTGTGATGCATCGGGATCTCAAGCCGGAGAACTTTCTGTTCGCGAATAAGAAGGAAACCGCGGCTTTGAAGGCTATAGATTTTGGCTTGTCTGTCTTCTTTAAACCAGGGGAAAGATTTAATGAGATAGTTGGAAGTCCATATTACATGGCTCCAGAGGTATTGAAGCGGAATTATGGGCCAGAAGTGGATATCTGGAGTGCTGGAGTAATTCTATACATCTTACTCTGTGGTGTTCCACCATTCTGGGCAGAAACTGAGCAAGGAGTTGCACAAGCAATCATACGGTCTGTTGTTGATTTCAAAAGGGATCCATGGCCAAAAGTTTCTGATAATGCTAAAGACCTTGTGAAGAAGATGCTAGATCCCGACCCAAGGCGGCGGCTTACTGCACAGGAAGTGTTAGATCATCCATGGTTACAAAATGCAAAGAAAGCTCCTAATGTTTCCTTGGGAGAAACTGTTAGAGCAAGGCTCAAGCAATTTTCTGTGATGAACAAGCTTAAGAAAAGAGCTTTGAGGGTGATTGCAGAGCATTTGACAGTGGAAGAAGCTGCCGGGCTAAAAGAGGGATTCCAGCTTATGGATACAAGCAACAGAGGCAAGATTAACATTGATGAACTACGGGCAGGGTTGCATAAATTAGGCCATCAAGTTCCTGATGCAGATCTCCAAATTCTTATGGAAGCTGGTGATGTAGACAGGGATGGGCACCTAGATTATGGAGAGTTTGTAGCCATTTCTGTTCATCTGAGAAAGATGGGAAATGATGATCATCTTCGCAAAGCCTTCCAATTTTTTGATAAGAACCAAAGTGGGTATATTGAGATTGAGGAACTGCGTGATGCCTTATGTGATGAGGTTGAAACAAACAGTGAAGAAGTTATCAATGCAATTATGCATGATGTGGACACAGACAAGGATGGAATGATAAGTTACGAGGAATTTGCTACGATGATGAAGGCCGGCACAGATTGGAGAAAGGCATCAAGGCAGTACTCGCGAGAGAGGTTTGCAAGCCTCAGCCTGACGTTGATGAGGGACGGGTCATTGCATGTAAACAGTGAAAACAATGACGCTAGATGA 1611 0.5009 MGNCCATPATDETKNRKKGKKENPFAIDYGLANNAASNGAKLTVLNSPTGREIGARYELGRELGRGEFGVTYLCTDKESGEELACKSISKKKLRTAIDIEDVRREVEIMRHLPHHPNIVTLRDTYEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAVVTRTIVQVVQMCHKHGVMHRDLKPENFLFANKKETAALKAIDFGLSVFFKPGERFNEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVVDFKRDPWPKVSDNAKDLVKKMLDPDPRRRLTAQEVLDHPWLQNAKKAPNVSLGETVRARLKQFSVMNKLKKRALRVIAEHLTVEEAAGLKEGFQLMDTSNRGKINIDELRAGLHKLGHQVPDADLQILMEAGDVDRDGHLDYGEFVAISVHLRKMGNDDHLRKAFQFFDKNQSGYIEIEELRDALCDEVETNSEEVINAIMHDVDTDKDGMISYEEFATMMKAGTDWRKASRQYSRERFASLSLTLMRDGSLHVNSENNDAR 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01969 536 SMART serkin_6 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01969 536 CDD EFh 434 496 IPR002048 GO:0005509
Cca03g01969 536 ProSitePatterns EF-hand calcium-binding domain. 479 491 IPR018247 -
Cca03g01969 536 SUPERFAMILY Protein kinase-like (PK-like) 55 324 IPR011009 -
Cca03g01969 536 SMART efh_1 398 426 IPR002048 GO:0005509
Cca03g01969 536 SMART efh_1 362 390 IPR002048 GO:0005509
Cca03g01969 536 SMART efh_1 470 498 IPR002048 GO:0005509
Cca03g01969 536 SMART efh_1 434 462 IPR002048 GO:0005509
Cca03g01969 536 SUPERFAMILY EF-hand 344 521 IPR011992 -
Cca03g01969 536 Gene3D Transferase(Phosphotransferase) domain 1 143 323 - -
Cca03g01969 536 Gene3D - 324 498 - -
Cca03g01969 536 Pfam EF-hand domain pair 433 496 IPR002048 GO:0005509
Cca03g01969 536 Pfam EF-hand domain pair 363 422 IPR002048 GO:0005509
Cca03g01969 536 Gene3D Phosphorylase Kinase; domain 1 59 142 - -
Cca03g01969 536 ProSiteProfiles EF-hand calcium-binding domain profile. 466 501 IPR002048 GO:0005509
Cca03g01969 536 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 32-LIKE 13 512 - -
Cca03g01969 536 ProSitePatterns EF-hand calcium-binding domain. 407 419 IPR018247 -
Cca03g01969 536 ProSiteProfiles EF-hand calcium-binding domain profile. 394 429 IPR002048 GO:0005509
Cca03g01969 536 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Cca03g01969 536 ProSitePatterns Protein kinases ATP-binding region signature. 63 86 IPR017441 GO:0005524
Cca03g01969 536 ProSiteProfiles EF-hand calcium-binding domain profile. 358 393 IPR002048 GO:0005509
Cca03g01969 536 Pfam Protein kinase domain 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01969 536 ProSiteProfiles EF-hand calcium-binding domain profile. 430 465 IPR002048 GO:0005509
Cca03g01969 536 ProSiteProfiles Protein kinase domain profile. 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01969 536 MobiDBLite consensus disorder prediction 1 21 - -
Cca03g01969 536 ProSitePatterns EF-hand calcium-binding domain. 443 455 IPR018247 -
Cca03g01969 536 CDD STKc_CAMK 56 314 - -
Cca03g01969 536 PANTHER SERINE/THREONINE-PROTEIN KINASE 13 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01969 Cca-Chr3 39640923 39644038 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01969 1 532 EF-hand Containing Proteins AT5G19450 77.341 0.0 881
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Cca03g01969 Pkinase 2e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01969 K13412 - gmx:100790745 983.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01969 03 39640923 39644038 Cca03g01969 03 39640923 39644038 ECH