Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01968 ATGACTGTCACACCTAAGATCTCTGTTAACGATGGGAAACTTGTTGTCCATGGCAAGACCATACTGACAGGAGTGCCGGACAACGTTGTGCTGACTCCAGGATCTGGAAGGGGCCTTGTGACCGGTGCCTTCATTGGTGCCACAGCTGGCCATAGCAAAAGTCACCATGTTTTTCCCATGGGTGTCTTAGAAGGGCTCCGGTTCATGTGTTGTTTCCGGTTCAAGTTATGGTGGATGACTCAGAGAATGGGAACTTGCGGGAGGGATGTTCCTCTGGAGACTCAATTCATGCTTATTGAGAGCAAAGAGAGCGAAGTGGATGAGGAGAATTCTCCAATCGTCTACACTGTCTTGCTTCCTCTCCTAGAAGGTCAATTCCGGGCTGTTCTACAAGGCAATGACAAGAACGAGATAGAGATTTGCCTCGAGAGTGGGGATAATGCGGTTGAGACTGACCAAGGCCTTCACATGGTCTACATGCATGCTGGGACAAACCCCTTCGAAGTCATCAATCAAGCTGTCAAGGCGGTTGAAAAACACATGCAAACTTTTCTTCATCGAGAGAAGAAAAGATTGCCATCTTTTGTTGATTGGTTTGGCTGGTGCACGTGGGATGCTTTCTATACTGATGTCACAGCTGAGGGTGTTGAGGAAGGCCTGAAAAGTCTCTCACAGGGAGGTACACCTCCAAGGTTCCTCATCATAGATGATGGTTGGCAACAGATTGAAAGTAAATCTAAGGATGTTGATTGTGTCGTACAAGAAGGAGCACAGTTTGCTACTAGATTGATTGGTATCAAAGAGAATACTAAATTTCAAAAGAAGTCACAGAGCAGTGAACAAGAATCAGGTCTGAAGCATCTTGTAGATGGAGCAAAGCAGCATCACAATGTGAAAAATGTATATGTATGGCATGCGCTAGCTGGTTATTGGGGTGGAGTGAAGCCAGCAGCAACTGGCATGGAACATTATGACACTTCCTTGGCATATCCAGTGCAGTCTCCAGGTGTGCTAGGAAACCAACCAGACATTGTCATGGACAGCTTGGCTGTGCATGGCCTTGGCCTAGTGCACCCAAAGAAGGTTTTCAATTTCTACAACGAGCTGCATGCTTACTTAGCTTCATGTGGAGTAGATGGAGTGAAGGTTGATGTGCAGAACATTATTGAGACCCTTGGTGCTGGACATGGTGGTAGAGTCTCCCTTACACGCAGCTATCATCATGCACTCGAGGCTTCCATTGCTCGTAATTTTGCAGACAATGGATGCATTGCATGTATGTGTCACAACACTGATGGACTTTATAGTGCCAAGCAGACTGCTGTTGTGAGAGCCTCTGATGATTTTTACCCTCGTGATCCCGCTTCCCATACCATCCATATTTCATCTGTTGCTTACAACTCACTTTTCCTTGGAGAATTCATGCAACCTGACTGGGACATGTTTCATAGTTTACACCCAGCAGCAGACTATCATGCTGCAGCTCGTGCAATTGGTGGATGTCCAATTTATGTTAGTGACAAGCCAGGCAACCACAATTTTGATCTTCTTCAGAAGCTGGTTCTCCCTGATGGTTCGGTTCTCCGTGCTCAGTTACCTGGCAGGCCCACCCGTGATTCTCTCTTTGTCGATCCAGCCAGAGATGGGACAAGCTTGCTCAAAATGTGGAATCTGAACAAATGCTCCGGAGTTGTTGGTGTATTTAACTGCCAAGGTGCGGGGTGGTGCAAGATAGAGAAGAAAACCCGCATCCATGATACATCTCCTGGTACACTCACTAGCTCTGTCTGTGCCTCTGATGTTGACCTCATCACCCAAGTAGCAGGTGCTGAATGGCTTGGAGAGACTATTGTTTATTCTTACAGATCAGGTGAGGTGATTCGACTACCAAAAGGAGTTTCGGTTCCGGTGACACTAAAAGCTCTGGAGTTTGAACTTTTCCATTTCTGTCCAATCCATGAAATAGCACCAAGTATTTCATTTGCAGCAATAGGGCTACTGGATATGTTTAACAGCGGAGGAGCTGTGGAACAAGTTGAGATTCATAGAGCCTCTAACAACAAACCAGAACTGTTTGATGGTGAGGTGTTTTCAGAACTGACCTCTTCTCTGAGTCCTAACCGAGCAACAACAGCAAGTATTGGTCTTAGAGTGAGGGGAAAGGGAAGATTTGGAGTTTACTCCTCCCAGCAGCCACTGAAGTGTGTGGTAGGTGGCACTGAAACTGACTTCAACTATGACTCAGAGACTGGGCTGGCAACCTTCTCCATCCCAGTTCCTTCAGAGGAGATGTATATTTGGTCAATTGAGATCCAAGTTTGA 2322 0.4638 MTVTPKISVNDGKLVVHGKTILTGVPDNVVLTPGSGRGLVTGAFIGATAGHSKSHHVFPMGVLEGLRFMCCFRFKLWWMTQRMGTCGRDVPLETQFMLIESKESEVDEENSPIVYTVLLPLLEGQFRAVLQGNDKNEIEICLESGDNAVETDQGLHMVYMHAGTNPFEVINQAVKAVEKHMQTFLHREKKRLPSFVDWFGWCTWDAFYTDVTAEGVEEGLKSLSQGGTPPRFLIIDDGWQQIESKSKDVDCVVQEGAQFATRLIGIKENTKFQKKSQSSEQESGLKHLVDGAKQHHNVKNVYVWHALAGYWGGVKPAATGMEHYDTSLAYPVQSPGVLGNQPDIVMDSLAVHGLGLVHPKKVFNFYNELHAYLASCGVDGVKVDVQNIIETLGAGHGGRVSLTRSYHHALEASIARNFADNGCIACMCHNTDGLYSAKQTAVVRASDDFYPRDPASHTIHISSVAYNSLFLGEFMQPDWDMFHSLHPAADYHAAARAIGGCPIYVSDKPGNHNFDLLQKLVLPDGSVLRAQLPGRPTRDSLFVDPARDGTSLLKMWNLNKCSGVVGVFNCQGAGWCKIEKKTRIHDTSPGTLTSSVCASDVDLITQVAGAEWLGETIVYSYRSGEVIRLPKGVSVPVTLKALEFELFHFCPIHEIAPSISFAAIGLLDMFNSGGAVEQVEIHRASNNKPELFDGEVFSELTSSLSPNRATTASIGLRVRGKGRFGVYSSQQPLKCVVGGTETDFNYDSETGLATFSIPVPSEEMYIWSIEIQV 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01968 773 PANTHER GALACTINOL--SUCROSE GALACTOSYLTRANSFERASE 2-RELATED 1 773 - -
Cca03g01968 773 Pfam Raffinose synthase or seed imbibition protein Sip1 7 756 IPR008811 -
Cca03g01968 773 Gene3D Aldolase class I 198 520 IPR013785 -
Cca03g01968 773 PANTHER - 1 773 IPR008811 -
Cca03g01968 773 SUPERFAMILY (Trans)glycosidases 194 521 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01968 Cca-Chr3 39622246 39628251 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01968 1 556 Glycoside Hydrolase AT3G57520 82.406 0.0 984
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01968 K06617 - gmx:100807861 1428.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01968 03 39622246 39628251 Cca03g01968 03 39622246 39628251 ECH
Cca03g01968 03 39622246 39628251 Cca02g00415 02 8696576 8713544 PCT