Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01965 ATGGGGACTCCCGAATTCCCAAATCTCGGCCACCATTGTTCTGTTTCTGATTGCAACCAGCTTGATTTTCTGCCCTTCACATGCGATCGTTGTCATCAGGTACATTGCTTGGAGCACCGAGGTTACACTGAACACAAGTGCACAAAGCCCAACAAACAAGACGTGACAGTAGTCATATGCCCTCTTTGTGCCAAAGGAGTTCGCCTCATTCCAGACCAAGACCCAAACATAACATGGGACAATCACGTCAACGTTGAATGCGACCCATCAAATTACGAGAAAGTGACAAAGAAGAGAAAATGCCCCGCCCCAGGATGCAAAGAAGTTTTGGTATTCTCCAACACAATCAAGTGCAGGGACTGCTTGGAAGACCACTGTTTGAAGCACCGTTTTGGGCAAGATCACAAATGTTCAGGTCCCAAGAAGTTGGAGACGAGTTTTTCATTCATGGGTCTTTTGAATAGAAGTGGCAGAAACGAGGAACCAAAGGCTAATTTGGCTTCGAGTACTGCGTCATCAAGGTGGACTTCAAGCTTTCTCAACGTGGCTTCTAATATTCGTGCCTCAGCTGAAGCGAGCATGGCCAAATTGAGCGGTGAAATTAACCAAGCTTGGCATGCGGCTAGGGATGGTGTGGGACTGCAGGGCAGTGGTGGTGGGAATAAAATTGAATCAAATGATGATAAAGTGGAGCAGTGTCCTCAGTGTGCTGCAAAGTTTTCTTCTGTGACTGGTTTAGTGGATCATGTGCAGAAGGTTCATGAAAAGAATGGGAATGGGGTTAAGGTTTTGTAG 795 0.4642 MGTPEFPNLGHHCSVSDCNQLDFLPFTCDRCHQVHCLEHRGYTEHKCTKPNKQDVTVVICPLCAKGVRLIPDQDPNITWDNHVNVECDPSNYEKVTKKRKCPAPGCKEVLVFSNTIKCRDCLEDHCLKHRFGQDHKCSGPKKLETSFSFMGLLNRSGRNEEPKANLASSTASSRWTSSFLNVASNIRASAEASMAKLSGEINQAWHAARDGVGLQGSGGGNKIESNDDKVEQCPQCAAKFSSVTGLVDHVQKVHEKNGNGVKVL 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01965 264 Gene3D - 81 148 IPR035896 -
Cca03g01965 264 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Cca03g01965 264 ProSiteProfiles Zinc finger C2H2 type domain profile. 231 259 IPR013087 -
Cca03g01965 264 SUPERFAMILY AN1-like Zinc finger 6 52 IPR035896 -
Cca03g01965 264 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Cca03g01965 264 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Cca03g01965 264 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 259 - -
Cca03g01965 264 SUPERFAMILY AN1-like Zinc finger 93 143 IPR035896 -
Cca03g01965 264 ProSitePatterns Zinc finger C2H2 type domain signature. 233 254 IPR013087 -
Cca03g01965 264 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270
Cca03g01965 264 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Cca03g01965 264 Gene3D - 2 59 IPR035896 -
Cca03g01965 264 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 259 - -
Cca03g01965 264 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01965 Cca-Chr3 39585215 39587002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01965 1 257 C2H2 Transcription Factor Family AT2G41835 57.977 1.25e-96 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01965 - - gmx:100806459 444.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01965 03 39585215 39587002 Cca02g00411 02 8634815 8639489 PCT