Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01963 ATGGAAATTTTATGCTTGTTGCACATTCTGCTAGCTTGGTGTGTGTCAAGGTTTGAGCTTGTTGGTGCTGAGCTTCAGGACCAAGCTATATTACAAGCCATCAACCAAGAGCTTAGAGTCCCTGGATGGGGGGATGCAACCAACTCAGATTACTGCACTTGGCAAGGTGTCAGCTGTGGAAACCACTCAATGGTGGAGGGCTTGGATCTGTCTCATCGTAATCTTCGAGGTAATGTAACTTTAATGTCTCAGCTCAAAGCTTTGAAGCGGCTTGATCTTTCACGTAATAACTTTGATGGAGTGATTCCTCCTGCTTTTGGAAACTTAACTGATCTCGAAGTTCTAGATTTGTCTTCAAATAAGTTCCAGGGTTCAATTCCACCTCAGTTGGGTGGTCTCAGAAGCCTAAAATCATTGAACCTTTCCAATAATGTGCTTGTGGGAGAAATACCAATGGAACTCCAGGGCTTAGAGAATTTGCAGGATTTACAAATTTCTAGTAATCATTTGAGTGGTCTTATACCTTCTTGGGTGGGAAATTTAACCAATTTGAGACTTTTCACTGCTTATGAGAACCGTTTAGGTGGCAGGATTCCAGATGTTCTAGGCTTGATTCCCGAGCTTCAAATACTTAACCTGCACTCTAACCAGCTTGAAGGTTCAATTCCAGCAAGCATTTTTGCTCCAGGGAAGCTGCAATTTCTGGTTCTCACCCAGAATAATTTTAGTGGTGAACTTCCAAAGGAAATTGGGAACTGCAAAGCTCTTTCCAGTGTTCGAATTGGAAACAACCATCTCGTAGGTGCTATTCCTAATACCATTGGAAATCTTAGTAGCCTAACCTACTTTGAAGCCGATAATAATGATCTTTCTGGTGAGGTTGTGTCCGAATTTGCTCAGTGTTCCAATCTGACCCTCCTGAATTTGGCTTCAAATGGATTTACTGGAACAATTCCACAAGACTTTGGACAACTTATGAACCTTCAGGAATTAATTCTCTCTGGAAATAGCCTATTTGGCGACATTCCAAAATCAATTCTGAGTTGTAAAAGTCTCAACAAGCTTGATATTAGCAACAACAGATTCAATGGGACAATACCAAAAGAAATCTGCAATATCTCCCGGTTGCAGTACTTGCTGTTGGATCAGAATTTCATAAGAGGAGAGATCCCCCAAGAAATTGGAAGTTGTGCAAAACTTCTTCAGTTGCAATTGGGCAGTAATTATTTGACTGGAACTATTCCTCCTGAGATTGGTCACATTAGGAACTTACAGATAGCATTAAATTTGAGCTTCAATCATCTCCATGGTCCTCTGCCCCTTGAATTAGGAAAACTGGACAAACTTGTTTCTTTGGATGTTTCAAACAATCGGCTGTCCGGTAATATTCCACCTGAGCTTGGGGGAATGTTGAGCTTGATAGAGGTGAACTTCTCAAATAATCTGTTTGAAGGCCCTGTGCCAACTTTTGTACCATTCCAGAAGAGTCCTAGTTCAAGCTTTTTGGGCAATAAAGGGCTTTGTGGAGAGCCTTTGAACTATTCATGTGGAGACCTTTATGATGATCACAAGGCTTACCATCACAGGGTTTCTTACAGAATCATACTAGCTGTAATTGGTTCTGGTTTGGCTGTTTTTATGTCAGTAACTATAGTTGTCTTGCTGTTTATGATCAGAGAGAGGCAAGAAAAAGTAGCCAAAGATGCTGGGATTGTTGATGAAGGCACCAATGACAACCCAACTATAATTGCAGGAAGCGTTTTTGTTGATAATCTAAGACAAGCAGTGGACCTTGATGCCGTTGTTAAAGCAACTCTGAAAGACAGTAACAAGCTCAGCAGTGGAACTTTCAGCACAGTTTACAAGGCAATCATGCCTTCAGGAGTGGTCTTATCTGTTAGGAGACTGAAGTCTGTAGACAAGACAATAATCCACCACCAGAATAAGATGATTAGAGAACTTGAAAGACTGAGCAAAGTTTGTCACGATAATCTAGTGCGCCCCATTGGCTACGTTATTTATGAAGATGTTGCTCTTCTCTTGCATCATTATTTTCCAAATGGAACATTGGCTCAGCTTCTTCATGAGTCTACTAGGAAACCTGAATATCAGCCTGACTGGCCTGCTAGGTTAGCCATTGCCATTGGCGTGGCTGAAGGTTTGGCTTTCCTTCATCATGTGGCAATCATTCATCTTGACATTTCTACTGGCAATGTTCTCTTGGATGCAAATTTCAAGCCGTTGGTTGGGGAAATCGAGATTTCTAAACTTCTGGATCCAACCAAAGGCACCGCAAGTATCAGCGCAGTTGCTGGTTCATTTGGTTACATACCACCAGAATATGCATATACTATGCAAGTCACAGCACCAGGAAATGTTTACAGCTATGGTGTTGTTCTGCTGGAAATCCTCACAACTAGACTACCAGTTGATGAGGATTTTGGTGAAGGTTTAGATTTGGTGAAATGGGTTCATAGTGCTCCAGTAAGAGGGGAAACTCCAGAGCAGATATTGGATGCTAGGCTAAGCACAGTTTCCTTTGGTTGGAGGAAAGAAATGCTTGCTGCTTTGAAGGTCGCGTTGCTGTGCACTGACAACACACCAGCCAAACGACCGAAAATGAAGAATGTGGTGGAAATGCTTCGAGAGATAAACCAAAACTAA 2664 0.4182 MEILCLLHILLAWCVSRFELVGAELQDQAILQAINQELRVPGWGDATNSDYCTWQGVSCGNHSMVEGLDLSHRNLRGNVTLMSQLKALKRLDLSRNNFDGVIPPAFGNLTDLEVLDLSSNKFQGSIPPQLGGLRSLKSLNLSNNVLVGEIPMELQGLENLQDLQISSNHLSGLIPSWVGNLTNLRLFTAYENRLGGRIPDVLGLIPELQILNLHSNQLEGSIPASIFAPGKLQFLVLTQNNFSGELPKEIGNCKALSSVRIGNNHLVGAIPNTIGNLSSLTYFEADNNDLSGEVVSEFAQCSNLTLLNLASNGFTGTIPQDFGQLMNLQELILSGNSLFGDIPKSILSCKSLNKLDISNNRFNGTIPKEICNISRLQYLLLDQNFIRGEIPQEIGSCAKLLQLQLGSNYLTGTIPPEIGHIRNLQIALNLSFNHLHGPLPLELGKLDKLVSLDVSNNRLSGNIPPELGGMLSLIEVNFSNNLFEGPVPTFVPFQKSPSSSFLGNKGLCGEPLNYSCGDLYDDHKAYHHRVSYRIILAVIGSGLAVFMSVTIVVLLFMIRERQEKVAKDAGIVDEGTNDNPTIIAGSVFVDNLRQAVDLDAVVKATLKDSNKLSSGTFSTVYKAIMPSGVVLSVRRLKSVDKTIIHHQNKMIRELERLSKVCHDNLVRPIGYVIYEDVALLLHHYFPNGTLAQLLHESTRKPEYQPDWPARLAIAIGVAEGLAFLHHVAIIHLDISTGNVLLDANFKPLVGEIEISKLLDPTKGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILTTRLPVDEDFGEGLDLVKWVHSAPVRGETPEQILDARLSTVSFGWRKEMLAALKVALLCTDNTPAKRPKMKNVVEMLREINQN 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01963 887 SUPERFAMILY L domain-like 36 293 - -
Cca03g01963 887 Gene3D Ribonuclease Inhibitor 25 175 IPR032675 -
Cca03g01963 887 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE TYROSINE-PROTEIN KINASE PXC3 1 884 - -
Cca03g01963 887 Gene3D Phosphorylase Kinase; domain 1 577 684 - -
Cca03g01963 887 Pfam Protein tyrosine and serine/threonine kinase 609 881 IPR001245 GO:0004672|GO:0006468
Cca03g01963 887 Pfam Leucine rich repeat 327 384 IPR001611 GO:0005515
Cca03g01963 887 Pfam Leucine rich repeat 87 146 IPR001611 GO:0005515
Cca03g01963 887 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 1 884 - -
Cca03g01963 887 Gene3D Ribonuclease Inhibitor 227 518 IPR032675 -
Cca03g01963 887 ProSitePatterns Tyrosine protein kinases specific active-site signature. 729 741 IPR008266 GO:0004672|GO:0006468
Cca03g01963 887 SUPERFAMILY L domain-like 198 514 - -
Cca03g01963 887 Gene3D Ribonuclease Inhibitor 176 226 IPR032675 -
Cca03g01963 887 ProSiteProfiles Protein kinase domain profile. 606 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01963 887 SUPERFAMILY Protein kinase-like (PK-like) 606 884 IPR011009 -
Cca03g01963 887 SMART LRR_typ_2 325 349 IPR003591 -
Cca03g01963 887 SMART LRR_typ_2 157 180 IPR003591 -
Cca03g01963 887 SMART LRR_typ_2 205 229 IPR003591 -
Cca03g01963 887 SMART LRR_typ_2 446 470 IPR003591 -
Cca03g01963 887 SMART LRR_typ_2 373 397 IPR003591 -
Cca03g01963 887 SMART LRR_typ_2 109 133 IPR003591 -
Cca03g01963 887 SMART LRR_typ_2 85 108 IPR003591 -
Cca03g01963 887 Gene3D Transferase(Phosphotransferase) domain 1 685 887 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01963 Cca-Chr3 39550876 39555416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01963 1 886 Receptor kinase-like Gene Family AT2G41820 71.879 0.0 1289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca03g01963 PK_Tyr_Ser-Thr 2.8e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01963 - - gmx:100789684 1627.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01963 03 39550876 39555416 Cca03g01963 03 39550876 39555416 ECH