Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01957 ATGGCGGAGTCATTCCTCTTCAGCATTGCGGAGTCCCTTATGGCAAAGCTTGCTTCTCGAGCTTTTGAAGAAGCTTCTCAGGTGTTGGGTGTATACGATCATCTCAAAGACTTTGAAAAAACTCTCTCATTAGTCCAGGCTATGCTGTTAGATGCTGACCAAAAGCAAGAGCAGAATCGTGAATTGCAAGAATGGTTGAAGCAGATCAAATGTGTCTTCTACGATGCTGAAGATGTGTTGGATGAATTTGAGTGCCAAACACTACGAAAGCAAGTGGTCAAAGCTCACGGTACCACCAAAAACAAGGTAGGTCACTTCTTCTCGACCTCTAATCCACTTGTTTTTCGTTATAGGATGGCTCAAAATATTAAAGATATCAACAAGAGGTTTGACAAGCTTGCAGCTGATAGGCATAAGTTTGGCCTTCAAATAATTCATGTTGACACACGTGTTGTTCATACTAGAGAACTAACACACTCCCGTGTGGCCGATTTAGATGTGATAGGAAGGGATCATGATAAAGAAAAGATCATAGAGCTTTTGATGCAGAAGAAGCCTAATGATGATGATACAAGTCTCTCTGTTATTCCCATAGTAGGGATGGGAGGCTTGGGAAAGACTACACTTGCAAAGTTTGTGTTCAATGATAAGAGAATAAATGAGTGTTTCCCATTCAAGATGTGGGTGTGTGTTTCTGATGATTTTGATATTAAACACTTGATTATCAAAATTATCAATACTGTCAATGATTTAGCTTCAGCTGATGCCCCTCCTCTCCAACATAATTTAAACATGTTGGATCTAGAGCAACTGCAAAATCAATTGACAAACAGACTTTTTGGTAAAGAATTTCTACTCGTTTTAGATGACGTGTGGAATGAAGACCGTGTTAAATGGGTTGAGTTGGAAAATTTAATACAAGTAGGTGCTGCAGGAAGTAAAATTCTAGTGACTACACGTAGTCATTCCATTGCTTCCATGATGGGCACTGTTCCCTCTTACATTTTAGAAGGTCTTTCTTTAGAGGATTCATTGTCTCTATTTATCAAATGGGCATTTCAAAAAGGAGAAAAGGACAAGCATCCTCATTTGGTAAATATTGGGAGAGATATCGTAAAAAGATGCGGAGGGGTTCCATTGGCAGTGAGAACATTAGGAAGTTTACTATTCTCAAAATTTGAGGCAAATGAATGGGAATATGTGAGAGACAGTGAAATTTGGAGTTTGTCACACAAAAAAGTTGACATTTTACCTGCACTTAAATTAAGTTATGATCTCATGCCATCCTATTTGAGACAATGTTTTGCATTATTTTCCCTTTTCCCAAAAGATTATGAAATCACTACTTTTGAGATAATTTTACTTTGGGGAGCACTTGGGCTCCTTACTTCACCAAAAAAGAACATGACACTTGAAGATGTTGCCAATCAATATTTATATGAACTACAGTCAAGATCTTTTCTCCAAGATTTTTTGAGCTTTGGCACTTATTATGTATTTACACTACATGATTTGGTGCATGATCTTGCTCTATTTGTTGCAAAAGATGAGTGTCTATTTATAAATTCTCATGTTCAAAATATTCCTGACAATGTTCGACATCTATGTTTTGCTGAAAGAAATTTGCTTGGTAGTTTATTCACCACAAAATCAGTAGCTGTAAGAACCATATTGTTTCAAGATGATACAATAGGATTCAATGGTGAGACTTTACTAAATACTTGTGTGTCAAAATTCAAATACTTGCGAGTTTTGGATTTAAGTTATTCAACATTTGAGATTTTTCCTCGTTCCATTGGCAAGTTGAAACACTTGAGGTATTTAAGCATCATGAATAGTCACAATATTAAGAGACTCCCTAATTCTATTTGCAAGCTCCAACATTTGCAAGTGTTGAAACTTGATGGATGCACAAAGTTGGAAACATTGCCCAAAGGATTAAGAAAATTGATCAGTCTCCGACATTTGGAGATAACCACAAAGCAATCTATTTTGCCAGCCAATGAGATTGTCAACTTAAGCTCGCTTGCATTTCTATCTATTCAGTCAAGCCAAAATTTGGAGTTTATCTTCACAGGGGAGAAATTCCTCGCTCTTCAAACATTGAGTGTTTCTTCCTGTCAAAATCTAAAGTCTTTGCCTCTGGATGTTAAAAAATTCCCTAAATTAGAAAGTTTGGTTGTCAAAGACTGTGATAATTTGGACTTGGAACTGTGGAAGGACCACCATGAAGAACAAAGCCCCGAGTTGAAGTTAAAATATGTTGAATTTTGGGATTTACCACAAATGGTGGGCTTGCCTCAATGGCTTAAAAAAACTACCAACTTGTTACACTCCTTGTTCCTTTTCAATTGTGACAATCTTGAGATGCTTCCAGAGTGGTTGTCAACTTTGACTAATCTAAAAACACTTGTTATAGAAAATTGTCCAAAGTTACTATCTCTCCCAAATAACATCCATCACCTCACTGCACTTGAAATTTTGATAATTCAAGGTTGTCCTGAATTATGTAAAAAATGTGAGCCTCATGTGGGAGAGTATTGGCCTAAAATATCACATATCAGAGATGTTATACTTGAAGATTCAGATGAAGAGTAA 2598 0.3672 MAESFLFSIAESLMAKLASRAFEEASQVLGVYDHLKDFEKTLSLVQAMLLDADQKQEQNRELQEWLKQIKCVFYDAEDVLDEFECQTLRKQVVKAHGTTKNKVGHFFSTSNPLVFRYRMAQNIKDINKRFDKLAADRHKFGLQIIHVDTRVVHTRELTHSRVADLDVIGRDHDKEKIIELLMQKKPNDDDTSLSVIPIVGMGGLGKTTLAKFVFNDKRINECFPFKMWVCVSDDFDIKHLIIKIINTVNDLASADAPPLQHNLNMLDLEQLQNQLTNRLFGKEFLLVLDDVWNEDRVKWVELENLIQVGAAGSKILVTTRSHSIASMMGTVPSYILEGLSLEDSLSLFIKWAFQKGEKDKHPHLVNIGRDIVKRCGGVPLAVRTLGSLLFSKFEANEWEYVRDSEIWSLSHKKVDILPALKLSYDLMPSYLRQCFALFSLFPKDYEITTFEIILLWGALGLLTSPKKNMTLEDVANQYLYELQSRSFLQDFLSFGTYYVFTLHDLVHDLALFVAKDECLFINSHVQNIPDNVRHLCFAERNLLGSLFTTKSVAVRTILFQDDTIGFNGETLLNTCVSKFKYLRVLDLSYSTFEIFPRSIGKLKHLRYLSIMNSHNIKRLPNSICKLQHLQVLKLDGCTKLETLPKGLRKLISLRHLEITTKQSILPANEIVNLSSLAFLSIQSSQNLEFIFTGEKFLALQTLSVSSCQNLKSLPLDVKKFPKLESLVVKDCDNLDLELWKDHHEEQSPELKLKYVEFWDLPQMVGLPQWLKKTTNLLHSLFLFNCDNLEMLPEWLSTLTNLKTLVIENCPKLLSLPNNIHHLTALEILIIQGCPELCKKCEPHVGEYWPKISHIRDVILEDSDEE 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01957 865 PANTHER NBS-LRR DISEASE RESISTANCE PROTEIN 6 790 - -
Cca03g01957 865 CDD RX-CC_like 2 129 IPR038005 -
Cca03g01957 865 Gene3D - 423 511 IPR036388 -
Cca03g01957 865 Gene3D - 338 422 IPR042197 -
Cca03g01957 865 Gene3D - 10 124 - -
Cca03g01957 865 SUPERFAMILY L domain-like 502 851 - -
Cca03g01957 865 Gene3D - 149 333 IPR027417 -
Cca03g01957 865 PANTHER DISEASE RESISTANCE PROTEIN RP 6 790 IPR044974 GO:0006952
Cca03g01957 865 Pfam Rx N-terminal domain 11 98 IPR041118 -
Cca03g01957 865 Pfam NB-ARC domain 171 424 IPR002182 GO:0043531
Cca03g01957 865 Gene3D Ribonuclease Inhibitor 552 858 IPR032675 -
Cca03g01957 865 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 437 IPR027417 -
Cca03g01957 865 PRINTS Disease resistance protein signature 195 210 - -
Cca03g01957 865 PRINTS Disease resistance protein signature 278 292 - -
Cca03g01957 865 PRINTS Disease resistance protein signature 375 389 - -
Cca03g01957 865 PRINTS Disease resistance protein signature 796 812 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01957 Cca-Chr3 39490202 39492922 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01957 582 659 WRKY Transcription Factor Family AT4G12020 37.179 1.59e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01957 - - gsj:114406329 1259.59