Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01953 ATGGCCGAGTATTTTGTCTTTGATATTGCTGAATCACTGCTAGGGAAGCTTGCTTCTTCTGTTTGTGAAGAAGCTTCTCGTGTCTATCATGTGTATAAGGATGTGCAAGGGATCAAAGACACCTTGTCAATTGTGAAAGGTGTGTTGTTGGATGCTGAGGAGAAGAGGGAGCAGAAGCATGGGTTGCGTGAATGGCTCAGGCAGATTCAAAACGTATGCTTAGATGCTGAAGATATATTGGATGGATTTCAGTGCCAAAACTTGAGAAAGCAAGTTGTCAAAGCTTCAGGCAGCACCAGAATGAAGGTAGGCCACTTCTTTTCTTCCTCAAATTCCCTTCTTTTCCgttttaggatggctcatcaaatcaaatatattagacatagattggataagatagcagctgatggcaacaagtttggtcttcagagaattgatgttgaccacagacttgtgcaaaggagggaaatgacttattcctatgttgacgcttcaggcgttataggaagggagatggatagggaggaaattatcaagcttttgatgcaacctcaccctcaaggtgatggtgatggagatagaagtttgtgtgtcattcccatcgtgggcattggaggcttagggaagaccacacttgcaaagttggtgttcaatgataagaggatggacgattttttccaattaaagatgtgggtgtgtatctcagatgactttgacattaggcagataattattaaaatcatcaactcagcttctgcttcagccccaattgttgctcttgctcaccaagaaaacattaacagtttagatattgagcagttacaaagtcgtcttagacacacgctttcttgtcagaagtatttacttgtgttcgatgatatatggaatgacgaccgtgcaaaatggatagagttgaaggatttattgaaggttggtgcagtgggaagcaaaatcttggtaacaacacgaagtggctcaattgcttcaatgatgggcacagttccctcgtatattttagaaggcctttccatggagaattgtttatctctttttgtcaaatgggcatttaaggaaggcgaagaaaaaaaatatcctaatctagtgaggatgggaaaagaaattgtgaaaaaatgccgaggggttccactagcagtgcgaactttaggaagctcccttttcttgaattttgatttagagaaatgggaatttgtaagagaccatgggatttggaacttgaaacaaaagaaagatgacattttacccgcccttaagttgagttatgaccaaatgccttcgtatttgaggcactgttttgctttcttttctctttatcctaaggattttggcattactaatgttgaaattgttattctttgggtgtcacttggattacttcgatctccggttggaagtcagaagctagagaatattgcaagacaatatatagaagagttacattcaagatcatttcttgaggattttgaggactttggccattattactatttcaaaatacatgatttgatacatgatcttgcactgtatgttgcgaaagacgaCCTTCTAGTGGTAAACTCTCGTACTCGCAATATACCTGAGCAAGTAAGACATTTATCAGTTGTTGAAAATCATTCACTTAGCAATGCTTTGTTCCCCAAATCCAGGACAGTGAGAACTATATTATTTCCCATCTACGGAATGGGCATTGATAGTGAAGCTCTTTTGTGTACATGGATAACAAGATACAAATACTTGCGGGTTTTAGATTTAAGTGATTCCTCTCTTGAGACTCTACCTAATTCAATTGCTAAATTGGAGCATCTGCGAGTCCTCAACCTTACAAATAACTGCAAAATACAAAGACTTCCTCATTCTATATGCAAACTCCAAAATTTGCAATATTTGTCACTCAGAGGATGCGTGGAGCTTGAAACATTGCCTAAAGGATTAGGGATGTTAATCAGCCTTCAATACTTGCTTATAACCACAAGACAACATATTCTGCCAGAGGATGAATTTGCAAGCTTGAGCAATCTTCAAATTTTGAGTTTTGAATATTGTGATAATTTGAAGTTTTTGTTTAGAGAGGCACAACTCACATCCCTTGAAGTTTTGCTTGTTCAATCATGTAGGAGCCTTGAGTCCTTACCTCTTCATATTCTCCCTAAACTGGAAGTTCTGACTGTAATTAGGTGCGAGATGCTAAATCTGTCGGTGAACTGTGAAAGCCCAATCCAAAGTTTGAGGTTGAAATTTCTGCATTTTGAGCATTGTCAAAGGCAACAGACATTGCCTCAATGGATTCGAGGAGCCGCAAACACTTTGCAGATATTGTTAATTTTAAATTGTGATAGTCTTAAGATGCTTCCTGAGTGGCTGACAGCAATGAGTCATCTTAAGATGCTCCATATTGTTAACTGTCCTCAACTGCTGTTTCTCCCAAGTGACATGCATCACCTCACTGCCCTTGAAGATTTGATCATAGATGGTTGTCCTGAATTGTGTCGAAAATGTGAGCCACAATCTGGTGAGTACTGGTCTTTCATCACTCACATCAAATGCCTTTCCATTGGAGAAACAAGAGAAGGAAAACTCCTTTTTCAAATGGAGAAGCAGTTTCGGTTGAGATTGCGGGATTAG 2640 0.217 MAEYFVFDIAESLLGKLASSVCEEASRVYHVYKDVQGIKDTLSIVKGVLLDAEEKREQKHGLREWLRQIQNVCLDAEDILDGFQCQNLRKQVVKASGSTRMKVGHFFSSSNSLLFRFRMAHQIKYIRHRLDKIAADGNKFGLQRIDVDHRLVQRREMTYSYVDASGVIGREMDREEIIKLLMQPHPQGDGDGDRSLCVIPIVGIGGLGKTTLAKLVFNDKRMDDFFQLKMWVCISDDFDIRQIIIKIINSASASAPIVALAHQENINSLDIEQLQSRLRHTLSCQKYLLVFDDIWNDDRAKWIELKDLLKVGAVGSKILVTTRSGSIASMMGTVPSYILEGLSMENCLSLFVKWAFKEGEEKKYPNLVRMGKEIVKKCRGVPLAVRTLGSSLFLNFDLEKWEFVRDHGIWNLKQKKDDILPALKLSYDQMPSYLRHCFAFFSLYPKDFGITNVEIVILWVSLGLLRSPVGSQKLENIARQYIEELHSRSFLEDFEDFGHYYYFKIHDLIHDLALYVAKDDLLVVNSRTRNIPEQVRHLSVVENHSLSNALFPKSRTVRTILFPIYGMGIDSEALLCTWITRYKYLRVLDLSDSSLETLPNSIAKLEHLRVLNLTNNCKIQRLPHSICKLQNLQYLSLRGCVELETLPKGLGMLISLQYLLITTRQHILPEDEFASLSNLQILSFEYCDNLKFLFREAQLTSLEVLLVQSCRSLESLPLHILPKLEVLTVIRCEMLNLSVNCESPIQSLRLKFLHFEHCQRQQTLPQWIRGAANTLQILLILNCDSLKMLPEWLTAMSHLKMLHIVNCPQLLFLPSDMHHLTALEDLIIDGCPELCRKCEPQSGEYWSFITHIKCLSIGETREGKLLFQMEKQFRLRLRD 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01953 879 Pfam NB-ARC domain 192 428 IPR002182 GO:0043531
Cca03g01953 879 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 440 IPR027417 -
Cca03g01953 879 Pfam Leucine rich repeat 584 640 IPR001611 GO:0005515
Cca03g01953 879 Gene3D Ribonuclease Inhibitor 518 876 IPR032675 -
Cca03g01953 879 Gene3D - 426 515 IPR036388 -
Cca03g01953 879 PANTHER DISEASE RESISTANCE PROTEIN RP 6 788 IPR044974 GO:0006952
Cca03g01953 879 SUPERFAMILY L domain-like 504 861 - -
Cca03g01953 879 PANTHER NBS-LRR DISEASE RESISTANCE PROTEIN 6 788 - -
Cca03g01953 879 CDD RX-CC_like 12 134 IPR038005 -
Cca03g01953 879 Pfam Rx N-terminal domain 11 98 IPR041118 -
Cca03g01953 879 PRINTS Disease resistance protein signature 198 213 - -
Cca03g01953 879 PRINTS Disease resistance protein signature 281 295 - -
Cca03g01953 879 PRINTS Disease resistance protein signature 378 392 - -
Cca03g01953 879 PRINTS Disease resistance protein signature 697 713 - -
Cca03g01953 879 Gene3D - 10 124 - -
Cca03g01953 879 Gene3D - 149 336 IPR027417 -
Cca03g01953 879 Gene3D - 341 425 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01953 Cca-Chr3 39439792 39444533 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01953 199 834 WRKY Transcription Factor Family AT5G45050 22.340 1.04e-08 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01953 - - gmx:100794422 1401.73