Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01951 ATGGCGTGCAATGGCTCTGGGTGCCAATCCGGTGGTTGCTACAAAGACGAAGATGCCACATGTAACCAACCAATAAAGTCTGAAGAAATCGATTCAAAGACCCCTAACAATGTCTGCATCAAGTGCAAGCTCAACGACGCCGTTTCCGGCTACGGCGGAATCGACGACGGTCGTTTCTGCGCCGACTGTTTCAAAACCAACTTGTTCGGAAAGTTTCGTTTCGCCGTCACATCAAACGCCATGATCACTCCCACCGATAAGGTCCTCGTTGCCTTCTCAGGTGGCCCTTCTTCCAGGGTAGCTTTGCAATTTGTGCATGACATGCAAGAGAGGGCTCAGAGGAACTTTGATGCGAGTAGAGATAGGTCACTACCGGTGTTTGGTGTTGGAGTTGTGTTTATTGATGAGAGTGCCGTGGTGCCAATTCCTTCTAATGAAATGAAGGAAGCGGTTGAAGTTATTGGTGAGGTTGTGTCGAGTTTGGCCCCGCCAAGGAAGGAGTTGCATATTGTTCCTGTTGAGACCATTTACTCCACGGATTCTGGTGATGGAAAGGAGAGGCTAATCAAGGTAGTGAACACGGTGAATGATCCGACGGGAAGGGAGGATATGTTGTTTTCTTTGCGAATGTTGGCACTGCAAAAGGTTGCCTCTGAATTTGGGTATAACAGGATCGTTTTAGGGTCATGCATTTCAAGGATTGCTTCCCATGTCATTTCAGCCACCGTGAAGGGTCAAGGATATTCATTACCTGCAGATATACAGTATGTTGATGCTAGATGGGAAATTCCTGTTGTGCTTCCTCTGCGCGATTGTTTTGCCCAAGAGATCAACATGCTTTGCCACCTTGACGGTCTAAAGACTTTAAAGTTGTCTACAGGTTCATGCTCTAGCATTAATGGCTTGGTCTCATCTTTTGTGGCTTTACTGCAGAAAGAAAACCCATCTCGAGAAAGCACAATTGTAAGAACAGCCGGTAAACTTACTCCCTTCCAATTCAACAGGATTCCAGAGATCATTGATGGTAACGTTCCCTTGGCAACTAGAAGACGCCAGAAGAGATATAATCTCAAATCCAATGAATCTGTTTCCTCAGAATCTTTCTGTCCTCTCTGCAACAGCCCACTTGACAAGAGTGAGATTGTGGATTGGAGTAATGTTGATAGCCACAGAAGTAGTAACATTTTTTACATTACCTGCTGTTCAAGTTGTCAGTTTCAGATACTTCCAAGTGACTCTGCATCAATGGAACAATTTTATATGGATTTACCACAATCAGTGGTTGGCCGAGCAAAGCAAGCCAACAATGGTAATTTGAGTCTGCTAAGGGAACAAATACAAGATTGCCTGCTTTCAGATGGGATAAATACTGGTTGTGGTAATTTAATTTACAGGTTGAGTAACTGTGAGAGGTTTCTTTTGGCCTGTGGCTTTACAAAGAGTTACGGAGCACCGAGATTCACTGGCCTCCTTCAGATCAAGGCAATTCGAAGAGTGTTAAAGTTTACTGAGGATACTCCTTGGGGGCATCATGGTGTACTTCCTCTTAAGAATCTGTTTTCATGGTTATTTAAATATTCCGAAATGAGTGATCAATGTGAATCACATGTTCCATTAGATATTAATTCTAGTGGGTGTGAGGAAAACTTGATCTCTCATTCACCACAAGAATGTAAGCTTGAAATCGATAGTTCTGATGAAAATGATGTTTTTCCTGTGCCACAACCACAGCCAGGAATGGTATTTAGTTCAGAGGCTGAGGCGAGATTGTATTACACAAAATATGCCAACCAAGTAGGCTTCCGCGTCATGACAAGAACATCAAAAAAGGGACGTGATGGCAAAGTTAAATATTTAATACTTGTATGTTCTGAAATAACAAGACATGCTTTTGCTGTGAAACAGTATTGTGCAGCTAGGATCAATTTGACTTTACGTAAAGATGGAACCTACCGAATTAACGCTGTTACACTCGGTCATAGTCATGAATTGGGTTCACATCATCTAATCCCAAGTGATATTGACACAAGGGGTAAAAGGACATTGGATGAAAAAGTTATTGACATGGGTGTTGAGAGGATATCAGACCaaaatggttgcaaaaactacgtacagagagaaagacgtttgaaaggggagaatggagatgctgaagcccttcagaagtatttgCATTTTAAACCTCATGTGGAGAGGCTTGAAATGTTATGCAATCAATTCAATAGTATTGCTGAGACCGCTTCTGAATTCGAGGATACAAGTTCGTTTGTAAAGGATACCCTATGTGACTTAAAGGAGAAACTTGAAACATGGACAACCCTATTGAGAAACTCATCTCTGGCGGATCTAGAGAAATGCAACTATATGATAGATTGGAAATGA 2382 0.4097 MACNGSGCQSGGCYKDEDATCNQPIKSEEIDSKTPNNVCIKCKLNDAVSGYGGIDDGRFCADCFKTNLFGKFRFAVTSNAMITPTDKVLVAFSGGPSSRVALQFVHDMQERAQRNFDASRDRSLPVFGVGVVFIDESAVVPIPSNEMKEAVEVIGEVVSSLAPPRKELHIVPVETIYSTDSGDGKERLIKVVNTVNDPTGREDMLFSLRMLALQKVASEFGYNRIVLGSCISRIASHVISATVKGQGYSLPADIQYVDARWEIPVVLPLRDCFAQEINMLCHLDGLKTLKLSTGSCSSINGLVSSFVALLQKENPSRESTIVRTAGKLTPFQFNRIPEIIDGNVPLATRRRQKRYNLKSNESVSSESFCPLCNSPLDKSEIVDWSNVDSHRSSNIFYITCCSSCQFQILPSDSASMEQFYMDLPQSVVGRAKQANNGNLSLLREQIQDCLLSDGINTGCGNLIYRLSNCERFLLACGFTKSYGAPRFTGLLQIKAIRRVLKFTEDTPWGHHGVLPLKNLFSWLFKYSEMSDQCESHVPLDINSSGCEENLISHSPQECKLEIDSSDENDVFPVPQPQPGMVFSSEAEARLYYTKYANQVGFRVMTRTSKKGRDGKVKYLILVCSEITRHAFAVKQYCAARINLTLRKDGTYRINAVTLGHSHELGSHHLIPSDIDTRGKRTLDEKVIDMGVERISDQNGCKNYVQRERRLKGENGDAEALQKYLHFKPHVERLEMLCNQFNSIAETASEFEDTSSFVKDTLCDLKEKLETWTTLLRNSSLADLEKCNYMIDWK 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01951 793 Pfam Cytoplasmic tRNA 2-thiolation protein 2 298 385 IPR019407 GO:0000049|GO:0002098|GO:0034227
Cca03g01951 793 Gene3D HUPs 38 394 IPR014729 -
Cca03g01951 793 Hamap Cytoplasmic tRNA 2-thiolation protein 2 [CTU2]. 33 412 IPR019407 GO:0000049|GO:0002098|GO:0034227
Cca03g01951 793 PANTHER CYTOPLASMIC TRNA 2-THIOLATION PROTEIN 2 29 452 IPR019407 GO:0000049|GO:0002098|GO:0034227
Cca03g01951 793 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 63 289 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Cca03g01951 CTU2 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01951 K14169 - gmx:100804325 855.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01951 03 39416867 39426413 Cca03g01951 03 39416867 39426413 ECH