Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01945 ATGGCTTCGTCTTCCTCCGATCCGGCGAAGTCCGCGGAGACATCGGAGGCGGCGGCCACGGCCACGCCCAGCGACCAGCTCTTGCTCTACAGAGGATTGAAGAAAGCGAAGAAGGAGAGAGGTTGCACCGCCAAAGAGCGCATCAGCAAAATGCCTCCCTGCGCCGCCGGCAAACGGAGTTCCATATACCGAGGCGTCACTAGACATAGGTGGACTGGTCGTTACGAAGCTCATCTTTGGGATAAGAGTACGTGGAACCAGAATCAGAATAAGAAGGGAAAGCAAGGTTCGGTTCGGTTCGGGGCGTATGATGACGAGGAAGCAGCGGCTAGAGCATATGATCTTGCTGCTCTCAAATATTGGGGTCCTGGGACTCTCATTAACTTTCCGGTGACTGACTATACAAGAGATCTTGAAGAAATGCAGAATGTGTCCAGAGAAGAGTACCTTGCATCTTTACGAAGGAAGAGCAGTGGCTTTTCAAGAGGACTCTCAAAATATCGTGGACTCTCCAGTCGATGGGAGCCATCATATGGCCGTATGGCTGGATCTGATTACTTCAATAGTATACATTATGGGGATGATTCAGCCGCAGAAAGTGAATATATAAGTGGTTTCTGTATAGAAAGAAAGATTGATTTAACTAGTCACATCAAATGGTGGGGATCTAATAAGACTCGACATTCTGACACCGGAACAAGATTATCAGAAGAAAGGAAACTTGGTTCTACCGGAGATATTTGCAGTGAACTTAAGCAATTAGAACAGAAAATCCAACCTACAGAACCTTACCAGATGCCACAGTTAGGCCTGCCCCTCAATGAGAAAAAGCATAGAAGTTCTTCGGTCTCTGCCTTAAGTATCTTGTCTAAATCTGCCGCTTACAAGAGCTTGCAAGAGAAAGCATCAAAGAGACAGGAAAATAGCACTGATAATGATGAGAACGAAAACAAAAATACAGTCAACAAGTTGGATCATGGCAAGGCAGTTGAGAAACCATCAAATCATGGAGGCAATGATCGGCTTGACATTGCAATGGGAATGAGTGGGACAATGTCTCTTCAAAGAAATGTTTACCCATTGACACCATTCTTGTCTGCACCACTTTTGACAGCCTACAATACTGTTGATCCATTGGTAGATCCTGTTCTGTGGACATCTCTTGCTCCTATACTTCCTGCTGGCCTTTCTCGTACAGCTGAGGTTACAAAGACCGAGACCAGTTCAACGTCTGAAGCGCTCAAGCAGGTCTTAGAGAATGCTCCCATGGCTTTTTTTTGCAAGCTTACATGGGTTTCAGAGTCAATAGTTGGACAAATTTTGATTTTACGCGGAATGTTCTGTAAAGAGGTGGAATTATGCTAG 1365 0.4557 MASSSSDPAKSAETSEAAATATPSDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQGSVRFGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGLSKYRGLSSRWEPSYGRMAGSDYFNSIHYGDDSAAESEYISGFCIERKIDLTSHIKWWGSNKTRHSDTGTRLSEERKLGSTGDICSELKQLEQKIQPTEPYQMPQLGLPLNEKKHRSSSVSALSILSKSAAYKSLQEKASKRQENSTDNDENENKNTVNKLDHGKAVEKPSNHGGNDRLDIAMGMSGTMSLQRNVYPLTPFLSAPLLTAYNTVDPLVDPVLWTSLAPILPAGLSRTAEVTKTETSSTSEALKQVLENAPMAFFCKLTWVSESIVGQILILRGMFCKEVELC 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01945 454 ProSiteProfiles AP2/ERF domain profile. 62 130 IPR001471 GO:0003700|GO:0006355
Cca03g01945 454 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 14 411 - -
Cca03g01945 454 MobiDBLite consensus disorder prediction 298 338 - -
Cca03g01945 454 Gene3D AP2/ERF domain 62 132 IPR036955 GO:0003700|GO:0006355
Cca03g01945 454 MobiDBLite consensus disorder prediction 1 22 - -
Cca03g01945 454 Pfam AP2 domain 62 122 IPR001471 GO:0003700|GO:0006355
Cca03g01945 454 SMART rav1_2 62 136 IPR001471 GO:0003700|GO:0006355
Cca03g01945 454 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Cca03g01945 454 PRINTS Ethylene responsive element binding protein signature 112 132 IPR001471 GO:0003700|GO:0006355
Cca03g01945 454 MobiDBLite consensus disorder prediction 1 23 - -
Cca03g01945 454 PANTHER BNAA03G19580D PROTEIN 14 411 - -
Cca03g01945 454 SUPERFAMILY DNA-binding domain 61 131 IPR016177 GO:0003677
Cca03g01945 454 MobiDBLite consensus disorder prediction 297 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01945 Cca-Chr3 39335762 39339352 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01945 20 426 AP2-EREBP Transcription Factor Family AT2G41710 61.871 5.80e-162 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca03g01945 AP2 4.3e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01945 K09285 - gmx:100814117 713.761