Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01944 GACATAATGGAGCTGGGAAAAGCACGACAATCTCAATGCTTGTTGGTCTGCTTCCTCCTACTTCTGGGGATGCTTTGGTGTTTGGAAAGAACATTGTATCAGATATTGATGAGATACGGAAGGTTTTGGGTGTCTGCCCACAACATGATATACTCTTTCCTGAATTAACAGTTAGAGAGCATTTAGAACTGTTTGCCATATTAAAGGGTGTGGAAGAACACTCATTGGACAATGTTGTTACTAATATGGCTGATGAGGTGGGCCTGGCTGATAAAATCAACAGTATTGTGAGAACTCTTTCTGGTGGCATGAAGAGGAAGTTGTCTCTTGGAATTGCATTGATTGGAAACAGTAAGGTTATAGTCCTTGATGAACCCACTAGCGGAATGGATCCATACTCGATGCGCTTGACTTGGCAATTAATAAAAAAAATTAAGAAGGGCAGAATAATTTTGCTCACTACACATTCTATGGATGAAGCAGAAGAACTAGGTGACCGGATAGCTATCATGGCCAATGGTTCTTTGAAATGCTGTGGAAGCTCCCTTTTCTTGAAGCATCATTATGGAGTTGGTTATACTCTAACTCTTGTGAAGTCAGCCCCTACTGCTTCTATAGCTGGTGATATAGTATACCGTCATGTTCCATCAGCAACATGTATAAGCGAGGTTGGAACTGAGATTTCTTTCAGACTTCCTATGGCATCCTCATCAGCTTTTGAGGGGATGTTTAGGGAAATTGAAGGTTACATGAAAAAACCAATTTCAAACATGGAATTGAGTGGCAATGGTGACAAAGACAGTCTTGGTATTGAAAGCTATGGTATATCTGTAACTACCCTGGAGGAGGTATTTTTGAGAGTTGCAGGATGTGACTATGATGAAGTTGAATGCTTTGAAGAAAATAACCATTCCCTTATATCAGACTCCGTGGCTTCTCTTCCTACTAATGATCATCCATCCACAAAAACAAGTTGCCTTAAAATTTTTGGAAATTATAAGAAGATTCTTGGTTTCATGTCTACCATGTTGGGAAGAGCTTGTGGCTTAATTTTTGCTACAGTTATTAGTTTTATCAACTTCTTGGGTATGCAGTGCTGTAGCTGTTGTCTCATCACTAGGTCAACATTTTGGCAACATTTTAAAGCCTTATTCATTAAAAGGGCAATATCTGCTCGAAGAGACCACAAAACAATTATTTTCCAGCTAATGATTCCTACTCTCTTCTTGTTTATTGGTCTTCTATTTCTCAAGCTCAAGCCACATCCTGATCAGCAATCACTGACCCTTTCAACTTCTCATTTTAATCCTCTATTGAGTGGTGGGGGTGGAGGAGGTCCAATTCCATTTAATCTATCTTTGCCAATTGCTGAAAAGGTAGCACAAAATGTCAAAGGAGGGTGGATTCAGAGATTCAAGCCAAGCTCATACAGATTCCCTAATTCAGAAAAGGCATTGGCTGATGCAGTGGAAGCAGCAGGGCCAGCTCTGGGGCCTGCTCTACTTTCAATGAGTGAATATTTAATGTCTAGCTTTAATGAATCCTACCAATCTAGGTATGGGGCAATTGTGATGGATGATCAGAATAATGATGGAAGCTTAGGATACACTGTATTGCACAACTGTTCTTGTCAACATGCTGCTCCCACCTTTATCAATTTGATGAATTCTGCAATTCTTAGGCTTGCAACCATGGACATGAATATGACAATTCAGACACGCAACCATCCTCTACCAACAACACAAAGCCAGCACTTACAACGTCATGACTTGGATGCCTTCTCTGCTGCAATTATTGTCAATATTGCTTTCTCTTTTATACCTGCCTCATTTGCCGTTTCAATTGTTAAGGAACGTGAAGTGAAAGCTAAGCAGCAGCAACTAATCAGTGGGGTTTCCGTCCTATCATATTGGGCTTCTACATTTATTTGGGACTTTGTGAGCTTCTTGTTTCCTGCCTCTTTTGCCATAGTTCTCTTTTACATCTTTGGTCTGGATCAGTTTGTTGGAGGGGTTTCTTTGTTACCAACAATCCTCATGCTTTTGGAATATGGACTCGCAATTGCATCATCAACTTATTGCCTAACATTTTTCTTTTTTGACCATACCATGGCTCAGAACGTGGTTCTCCTGATTCACTTTTTCACCGGATTGATTCTAATGGTTATCTCATTTATTATGGGACTCATGCCATCAACAATGAGTGCAAATTCTTTACTTAAGAATTTTTTCAGAATATCTCCTGGATTTTGTTTTGCTGATGGTCTTGCTTCATTAGCTCTTCTGCGGCAAGGAATGAAAGATAAAACAAGTGATGGGGTTTTTGATTGGAATGTTACCGGTGGTTCCATCTGTTATCTTGCTGTTGAGAGCTTTAGTTACTTTCTGTTGACACTTGCACTTGAAATTTTCCCTTCTCTCAAATTGACTTCATTCATGATCAAGAAGTGGTGGAGAGATGTTAATATTTTCCGGCGTGATACTCCTTATTTGGAACCTCTGTTAGAACCTTCATCTGAAACTGTTGCAATGAACTTCAATGAAGATGTAGATGTGAAAACAGAAAGAGATAGAGTACTTTCCGGTTCCCTTGACAATTCCATTATCTACCTGCACAATCTTCGTAAGGTATATTTTGAGGAGAAGCATCATGCGAAAAAGGTTGCAGTAGATTCATTAACTTTCTCAGTTCAGGAAGGAGAATGTTTCGGATTTTTAGGAACAAATGGAGCTGGAAAGACCACAACACTTTCTATGCTATGTGGGGAAGAATCTCCGTCTGATGGGACTGCCTTTATTTTTGGCAAAGATATATGTTCCCATCCCAAGGCTGCTCGTCGATACATTGGATATTGTCCACAATTTGATGCTCTGTTGGAATACTTAACTGTCCAAGAGCATCTTGAGCTCTATGCTAGAATAAAAGGTGTTCCAGATTTTGCACTAGAAAATGTTGTTATGGAAAAGTTGGCAGAGTTTGACTTATTGAAGCATGCTAATAAACCATCATTTTCACTTAGTGGAGGGAATAAAAGAAAACTCTCTGTTGCAATTGCAATGATTGGAGATCCTCCTATTGTCATTCTTGATGAACCATCCACAGGTATGGATCCCATTGCCAAAAGGTTCATGTGGGATGTAATATCTAGGATATCCACAAGACGAGGAAAGACTGCAGTAATTCTTACTACCCACAGCATGAATGAAGCTCAAGCCTTATCTACCAGAATAGGGATAATGGTTGGTGGACGATTACGATGCATTGGAAGTCCACAGCACCTAAAAACTAGATTTGGGAATCATCTGGAACTAGAGGTAAAGCCCACTGAAGTGAGTTCTGTGGACTTGCAAACTCTCTGCCAAGCTATTCAAGAAAGACTGCTTGATGTCCCTTCTCATCCTAGAAGCTTACTTAATGACCTTGAAATTTGCATTGGGGGCACTGACTCTGTCACATCAGGAAATACCTCCATTGCAGAGATTAGCTTGACACGAGAAATGATAGGCTTAATTGGGCGCTGGCTTGACAATGAAGAAAGAGTGAAAACACTAATCTCTTGTACACCTGTCTGTGATGGAGGTTCTCAGGAACAGTTATCAGAACAACTGTTTCGAGATGGTGGTATTCCTTTGCCAGTATTTTCTGAGTGGTGGCTGTCTAAACAAAAGTTCTCTGAAATTGATTCATTTTTTCTATCTTCCTTTCGTGGAGCAAGATGTCAAGGGTGCAATGGTTTAAGCATCAGATATCAGTTACCATATAATGAGGATTTTTCTCTGGCAGATGTTTTTGGACTTCTTGAAAAAAACAGAAATAGATTAGGGATTGCGGAGTACAGCATCAGCCAATCAACTCTTGAGACGATATTCAATCATTTTGCAGCTAATCCATGA 3893 0.3989 HNGAGKSTTISMLVGLLPPTSGDALVFGKNIVSDIDEIRKVLGVCPQHDILFPELTVREHLELFAILKGVEEHSLDNVVTNMADEVGLADKINSIVRTLSGGMKRKLSLGIALIGNSKVIVLDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHHYGVGYTLTLVKSAPTASIAGDIVYRHVPSATCISEVGTEISFRLPMASSSAFEGMFREIEGYMKKPISNMELSGNGDKDSLGIESYGISVTTLEEVFLRVAGCDYDEVECFEENNHSLISDSVASLPTNDHPSTKTSCLKIFGNYKKILGFMSTMLGRACGLIFATVISFINFLGMQCCSCCLITRSTFWQHFKALFIKRAISARRDHKTIIFQLMIPTLFLFIGLLFLKLKPHPDQQSLTLSTSHFNPLLSGGGGGGPIPFNLSLPIAEKVAQNVKGGWIQRFKPSSYRFPNSEKALADAVEAAGPALGPALLSMSEYLMSSFNESYQSRYGAIVMDDQNNDGSLGYTVLHNCSCQHAAPTFINLMNSAILRLATMDMNMTIQTRNHPLPTTQSQHLQRHDLDAFSAAIIVNIAFSFIPASFAVSIVKEREVKAKQQQLISGVSVLSYWASTFIWDFVSFLFPASFAIVLFYIFGLDQFVGGVSLLPTILMLLEYGLAIASSTYCLTFFFFDHTMAQNVVLLIHFFTGLILMVISFIMGLMPSTMSANSLLKNFFRISPGFCFADGLASLALLRQGMKDKTSDGVFDWNVTGGSICYLAVESFSYFLLTLALEIFPSLKLTSFMIKKWWRDVNIFRRDTPYLEPLLEPSSETVAMNFNEDVDVKTERDRVLSGSLDNSIIYLHNLRKVYFEEKHHAKKVAVDSLTFSVQEGECFGFLGTNGAGKTTTLSMLCGEESPSDGTAFIFGKDICSHPKAARRYIGYCPQFDALLEYLTVQEHLELYARIKGVPDFALENVVMEKLAEFDLLKHANKPSFSLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWDVISRISTRRGKTAVILTTHSMNEAQALSTRIGIMVGGRLRCIGSPQHLKTRFGNHLELEVKPTEVSSVDLQTLCQAIQERLLDVPSHPRSLLNDLEICIGGTDSVTSGNTSIAEISLTREMIGLIGRWLDNEERVKTLISCTPVCDGGSQEQLSEQLFRDGGIPLPVFSEWWLSKQKFSEIDSFFLSSFRGARCQGCNGLSIRYQLPYNEDFSLADVFGLLEKNRNRLGIAEYSISQSTLETIFNHFAANP 1296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01944 1296 Pfam ABC transporter 1 127 IPR003439 GO:0005524
Cca03g01944 1296 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY A (ABC1), MEMBER 3B 722 1108 - -
Cca03g01944 1296 CDD ABC_subfamily_A 868 1094 - -
Cca03g01944 1296 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY A (ABC1), MEMBER 3B 1 722 - -
Cca03g01944 1296 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1 197 IPR003439 GO:0005524
Cca03g01944 1296 ProSitePatterns ABC transporters family signature. 1005 1019 IPR017871 GO:0005524
Cca03g01944 1296 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 1 722 IPR026082 GO:0016021|GO:0055085|GO:0140359
Cca03g01944 1296 CDD ABC_subfamily_A 1 185 - -
Cca03g01944 1296 ProSitePatterns ABC transporters family signature. 99 113 IPR017871 GO:0005524
Cca03g01944 1296 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 867 1097 IPR027417 -
Cca03g01944 1296 Pfam ABC-2 family transporter protein 396 798 - -
Cca03g01944 1296 Pfam ABC transporter 890 1032 IPR003439 GO:0005524
Cca03g01944 1296 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 179 IPR027417 -
Cca03g01944 1296 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY A (ABC1), MEMBER 3B 1060 1293 - -
Cca03g01944 1296 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 868 1106 IPR003439 GO:0005524
Cca03g01944 1296 Gene3D - 1 200 IPR027417 -
Cca03g01944 1296 Gene3D - 860 1110 IPR027417 -
Cca03g01944 1296 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 722 1108 IPR026082 GO:0016021|GO:0055085|GO:0140359
Cca03g01944 1296 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 1060 1293 IPR026082 GO:0016021|GO:0055085|GO:0140359
Cca03g01944 1296 SMART AAA_5 898 1083 IPR003593 -
Cca03g01944 1296 SMART AAA_5 1 174 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01944 Cca-Chr3 39272194 39310158 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01944 2 200 Calmodulin-binding Proteins AT2G36910 24.880 3.24e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01944 K05643 - gmx:100803263 2435.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01944 03 39272194 39310158 Cca03g01944 03 39272194 39310158 ECH