Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01943 ATGAAGGGTATTAAAAAAGGGGTAGGCTTAGTGCGTACGTTTCAACTTGAAGTATTTAGAGAGGAAAATCAAATATTGAATCAAGCTAGGTCTTGCATTTCTCATGAACTGTGGAGTCGTGTTGGGTTTCTATTGTTGGGGTTGGGAGTTCTTAACTGCCcttcttctcttctcctcctcctcttattcatcattctcttcttcttcctcctcatcttAatatatatatatatatattattttcttttcttttatacaaatttaataataaataataatatGGAAGGAGTTAGAAATGATCATGATAATAAGGGGTTGTTGGAATGTGCAAGGAAGTGCACTccaccaccgtttttgatgaagacttacatgttggtggaggatccggccaccgacgacgtcgtttcgtggaaccgcgaagggacggcgtttgtggtgtggcagccggcggagtttgcccgtgatctgctgccaacactcttcaagcacagcaacttctctagctttgtgcgtcaactcaatacttatGGCTTTCGTAAAGTTGCAACAAGTAGATGGGAGTTTTTCAATGACAAGTTCAAGAAAGGTGAAAGAGAACTGCTGCATGAGATTCGGCGAAGAAAAGCTTGGACCAACAAGCAACAACCTAATGCACCAAACCAAGATTCTGATGAAGATCAAAGGTCCTCATCAACCTCTTCATCTTCTGGTTACACCACTCTTGTGGATGAAAACAAACGACTTAAGAAGGAGAATGGGGTGTTGAGCTCTGAGCTCACAAGCATGAAAAGGAAGTGCAAGGAACTGCTTGATTTGGTTGCCAAATATTCATCACATGCAAAGGAGAAGGAAGAAGATGAAAGGCCAAAGCTGTTTGGGGTGAGACTTGATGTTCAAGGAGGGAGAGAGATGAAGAGGAATAGAACTGAGATGAGTGAAAGCGCAAGCATTATGCTGTCTCAGTCATGCAAATAG 975 0.2882 MKGIKKGVGLVRTFQLEVFREENQILNQARSCISHELWSRVGFLLLGLGVLNCPSSLLLLLLFIILFFFLLILIYIYIYYFLFFYTNLIINNNMEGVRNDHDNKGLLECARKCTPPPFLMKTYMLVEDPATDDVVSWNREGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFFNDKFKKGERELLHEIRRRKAWTNKQQPNAPNQDSDEDQRSSSTSSSSGYTTLVDENKRLKKENGVLSSELTSMKRKCKELLDLVAKYSSHAKEKEEDERPKLFGVRLDVQGGREMKRNRTEMSESASIMLSQSCK 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01943 324 SUPERFAMILY "Winged helix" DNA-binding domain 114 207 IPR036390 -
Cca03g01943 324 SMART hsfneu3 114 207 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca03g01943 324 MobiDBLite consensus disorder prediction 211 242 - -
Cca03g01943 324 ProSitePatterns HSF-type DNA-binding domain signature. 157 181 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca03g01943 324 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-3 101 324 - -
Cca03g01943 324 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 101 324 IPR027725 -
Cca03g01943 324 PRINTS Heat shock factor (HSF) domain signature 118 141 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca03g01943 324 PRINTS Heat shock factor (HSF) domain signature 156 168 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca03g01943 324 PRINTS Heat shock factor (HSF) domain signature 169 181 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca03g01943 324 MobiDBLite consensus disorder prediction 303 324 - -
Cca03g01943 324 Coils Coil 245 265 - -
Cca03g01943 324 Gene3D - 110 208 IPR036388 -
Cca03g01943 324 MobiDBLite consensus disorder prediction 207 243 - -
Cca03g01943 324 Pfam HSF-type DNA-binding 118 207 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01943 Cca-Chr3 39265471 39269029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01943 115 297 HSF AT2G41690 56.039 2.90e-69 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Cca03g01943 HSF_DNA-bind 1.3e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01943 K09419 - gmx:100802739 390.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01943 03 39265471 39269029 Cca03g01943 03 39265471 39269029 ECH