Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01942 ATGGTGATGATATGGGAAAATGTTACAGTTGAACTCAGAGATGCTAGTTTTGGAGAACACAAGAAGAAGTTGCTCAGTGGAATCACTGGTTTTGCTGAACCTGCTACGATTATGGCTGTCATGGGTCCTTCTGGCTGTGGCAAAACCACCTTCCTTGACTCTTTCACTGGAAAACTTTCTCCAAATGTTGCAGTAACAGGAAACATTCTAATCAATGGAAAGAAGCAAAGCTTGTATTCAAGAGAAGTGTCGTACGTGGCTCAAGAGGAACTTTTCTTGGGAACTTTGAGTGTGAAAGAGACCCTCACATACTCTGCGAACATGAGGCTTCCTTCTAAAATGACCAAAGAAGAGATAAACAAAGTGGTTGAAGAAACCATTATGGAAATGGGTTTGGAAGAATGTGCACATAATAGGATTGGAAATTGGCATTCTCGTGGTATTAGTAATGGTGAAAAGAAGAGACTTAGCATTGGCCTTGAGATTTTAACACAACCCCATGTCTTACTTCTTGATGAACCTACTAGTGGACTTGATAGTGCCTCTGCTTTCTATGTGGTTCAAGCTCTATGCCACATTGCTCGCAATGGAAAGATTGTTATCTGTTCCATTCACCAACCAAGTAGTGAGATTTTTGATTTGTTTGATGATTTGCTTTTGCTCTCAAGTGGGGAAACTGTTTATTTTGGAGAAGCAAAAATGGCTCTAAAGTTTTTTGCCGATGCAGGGTTTCCCTGTCCTACCAGAAGAAATCCTTCAGATCATTTCCTTTTGTGTATTAATTTGGACTTTGACTTGATTGCTGAAACGCTACAGAGAACACAATTAAGTTTGGCAACAACATCAAATTCAACAATGGGAATGAGAACATCAGAGATCAGAAGGACACTCATTGAGAGTTACAAAAATTCAAAGCTAATAATCGATGCAAGGAGAAAAATTCAACATCTCAAACCCAATGAAGAGCAAGAAATTAGGCCCAACAGAGGTAGCAGCACCACATGGAGGAAGCAATTGTGTGCATTGACCAAGCGTTCTTTCCTAAATATGACTAGAGACATTGGTTACTACTGGCTGAGGATAATATTCTACATTATGGTAGGAGTCACTGTTGGCACCCTCTTTTATCATATTGGCACTGGCAACAACTCAATCTTGGCGAGAGGAAAGTGTGTTTCCTTCATCTATGGCTTCATGATTTGTTTGTCATGTGGGGGATTACCATTTTTCATTGAAGAATTGAAGGTGTTCTATGGTGAAAGGTCGAAAGGGCATTATGGAGAGGCTGTATTTGTAGTATCAAACATGATATCATCATTCCCTTTCCTTGTTCTAATATCTCTCTCCTCCGGAATAATCATCTACTTCATGGTGCAATTTCATCCAGGTTTATCAAATTGTGCATTTTTCTGCATCAACTTATTATGCTGCTTATCTGTTGTTGAGTGCTGCATCATGATTGTAGCCTCATTGGTCCCCAATGTGCTGATGGGCATAGGAATAGGAACTGGTGTCATTATTTTCATGATGATGCCCTCCCAAATATTCAGATCATTACCTGAACTTCCAAAGTTCTTTTGGCGCTATCCCATGTCCTACCTCAGTTTTGCTTCTTGGGCAGTGCAGGGACAATACAAGAATGACATGTTAGGGGTTGAATTTGATCCTTTGCTGCCTGGAGGTCCCAAAGTTAGTGGAGAAACGGTGCTATCAACTGTGTTTGGGGTTCCATTGGATCATGGCAAATGGTGGGACTTAACAGCATTGGTAACCGTATTATTAGTTCACAGATTGGTTCTGTATTTGGTGCTTCGGTTTGTCAAAATATCTAAATCGCCAAAGCTGTGGTTTTATGCCAAGAAAAGTATACACCTTGCAGAAAGATGTTTATCCAATAACAAGCTTTCTATCTCTAACAGGAAACAAGCTCAGCATCCATTATCGTCTCAAGAGGGTCTTATGTCCCCAAACCTTCCAATATAA 1983 0.4019 MVMIWENVTVELRDASFGEHKKKLLSGITGFAEPATIMAVMGPSGCGKTTFLDSFTGKLSPNVAVTGNILINGKKQSLYSREVSYVAQEELFLGTLSVKETLTYSANMRLPSKMTKEEINKVVEETIMEMGLEECAHNRIGNWHSRGISNGEKKRLSIGLEILTQPHVLLLDEPTSGLDSASAFYVVQALCHIARNGKIVICSIHQPSSEIFDLFDDLLLLSSGETVYFGEAKMALKFFADAGFPCPTRRNPSDHFLLCINLDFDLIAETLQRTQLSLATTSNSTMGMRTSEIRRTLIESYKNSKLIIDARRKIQHLKPNEEQEIRPNRGSSTTWRKQLCALTKRSFLNMTRDIGYYWLRIIFYIMVGVTVGTLFYHIGTGNNSILARGKCVSFIYGFMICLSCGGLPFFIEELKVFYGERSKGHYGEAVFVVSNMISSFPFLVLISLSSGIIIYFMVQFHPGLSNCAFFCINLLCCLSVVECCIMIVASLVPNVLMGIGIGTGVIIFMMMPSQIFRSLPELPKFFWRYPMSYLSFASWAVQGQYKNDMLGVEFDPLLPGGPKVSGETVLSTVFGVPLDHGKWWDLTALVTVLLVHRLVLYLVLRFVKISKSPKLWFYAKKSIHLAERCLSNNKLSISNRKQAQHPLSSQEGLMSPNLPI 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01942 660 Pfam ABC transporter 33 176 IPR003439 GO:0005524
Cca03g01942 660 Pfam ABC-2 type transporter 338 543 IPR013525 GO:0016020|GO:0140359
Cca03g01942 660 Gene3D - 4 242 IPR027417 -
Cca03g01942 660 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 1 631 - -
Cca03g01942 660 PANTHER CASSETTE TRANSPORTER, PUTATIVE-RELATED 1 631 - -
Cca03g01942 660 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 238 IPR027417 -
Cca03g01942 660 MobiDBLite consensus disorder prediction 641 660 - -
Cca03g01942 660 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 10 248 IPR003439 GO:0005524
Cca03g01942 660 SMART AAA_5 34 225 IPR003593 -
Cca03g01942 660 Pfam ABC-2 type transporter 205 257 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01942 Cca-Chr3 39250808 39254700 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01942 32 217 Calmodulin-binding Proteins AT2G36910 26.396 2.34e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01942 K05681 - gmx:100802207 1127.08