Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01940 ATGGAAGATTGCTCGAGAAATAGGACTCGTGATTTTAACATGGCTTCAAGAAAAGCTGAGGAGACTGCTTGGAGACGTTATGAGGCAACTCAATGGCTAGAAAGCCAAGTGGGTCCTCTTGGTATATCCAACCAGCCTACCGAGAGAGAACTTATTTCTTGCTTGAGAAATGGTCGGATTCTTTGCAATGCCATTAACAAGATTCATCCAGGAGCAGTGGCTAAAGTTGTGGAAAATCAAGTGGCTTCAGAATCACTTACATGGGATTCACAGCCTTTGCCTGCCTATCAGTATTTTGAAAATGTACGCAATTTTCTGGTTGCAATGGAAGAATTAAAGCTTCCGGCTTTTGAAGCTTCTGATCTTGAAAGGGATACACTAGAGATGGGATCCGCAGCAAAAGTGGTCAACTGCATTTTGACGCTTAAATCGTTTCAAGAGTTGAAGCAGATGAACAATCAGAATGGATCCAGCAAACATTTAAGATCTCCTTTGTCTATGCATTCAATCAGTAGAATGCATTCAAGAGCTGCAGCTGCATTTCCTTCTGATTCTTGTAGGCACTTGGATTTGTCTGCCACATTGGAAAAAATGCCTCCCGTTGAGAATAATTTTCCAAAACGAGAAGCAGAAATTGTGGAATTACTTGTCAAGCAACTGGTTGACCGTATGTTTGATGCCAAAGAAAATATTGATGGAAACATTATTGCTTCTCTTCGTGATGAACACTTGGCAGCAGATCCAATAAAAGTATTTAATCAAATAATAGCATGTTGTAATGGGGAACAGCCTCCTACAAGTTTCCATGAGGATTTTATTAAAGAAAAGGGTAGCTTACCACCTCATATCGCTTCCACACCTACTCAATCAGATGCTTTATCTGCTCCTGACAGTTCTAAGCGTTGCCAAGCTTGCCCAGGAAAGTGCAAGTGCAATCAGGTGCATCTTTTAGACATGCAGGAAAAGGATCTTCTGGATCTCAAGGCTTTGAAGTTGAAAATTAAGAAAGAGTTTGAAGAGATGCAGTCACAGTTTCAAGGATTTTTTAATGATATTGGAAGTCAAATACAGGAGATGTCAACTAAAGCTCTTGGATATCACAGAGTAGTAGAAGAGAATAGGAGACTATACAACATGGTCCAAGATTTGAAAGGTAATATTCGAGTTTACTGCAGAATTAGACCCTCATTCCGGGCCGAATCCAAGAATATTGTTGATTTCATTGGGGAAGACGGTTCTCTATTCATTTTAGATCCAACAAAAACACTAAAAGATGGAAGGAAACTTTTTCAGTTTAATCGAGTTTTTGGTCCAACAGCCGGCCAAGATGAGGTTTATAAGGATACTCAACCATTAATTAGGTCCGTGATGGATGGATACAATGTTTGTATTTTTGCTTATGGTCAAACTGGATCTGGGAAGACTTACACCATGAGTGGTCCTTCGGGTGGAACATATAAGGATATGGGAATCAATTATCTGGCTCTTAATGATCTATTTCAAATGTCTAATGAAAGGAATGAGATTATGAAGTATGACATTTATGTTCAAATGGTTGAGATTTACAATGAACAAGTTAGAGACCTACTTGGAGAGGACAAAACAGATAACAAATATCCTTTTCATTTTCATTATTTCATCCGGAGCTGCAATGATGACGGGATGAGCCTTCCTGATGCCAGATTGCGTTCAGTGAAGTCTACAACTGATGTTATGACTCTAATGAAACTTGGTGAGGTTAATCGTGCTGTCAGTTCAACTGCAATGAACAATAGGAGTAGTCGTTCCCACAGTGTACTTACGGTGCATGTTCATGGCAAAGATACATCTGGGAACTCCATTCGCAGTTGCCTACACTTAGTAGACCTAGCTGGAAGTGAACGAGTAGACAAGTCTGAAGTTACAGGGGAAAGACTAAAGGAAGCACAATTTATTAACAAGTCTCTTTCGTGTTTGGGAGATGTGATCACTGCCCTGGCTCAAAAGAATTCTCACATTCCTTACAGGAACAGCAAACTCACACTTCTTTTGCAGGACTCCTTAGGTGGACATGCTAAAACATTGATGTTTGCTCATGTGAGTCCGGAAGCAGATTCATTTGGTGAAACAGTGAGTACTCTAAAGTTTGCTCAGCGGGTTTCCACTGTGGAACTGGGGGCAGCCCGAATGAACAAAGAAAGCAGTGAGGTTATGCAACTTAAAGAGCAGGTTGAGAACCTTAAGATTGCATTGGCAAACAAGGAAGCTCAGAGAGCAATGTTCAACAGAATTAAAGAACCACACACTCCATTAGAGAAACCAACACTGGTGTCCGAGAAAACTCCATTGCGCCCTCGAAGACTTAGCATTGAGAACTGCAGTGGTGCAAAGACTGACAAATCTGTGAATCGTGAGGATAGAACTGGAGCCAAATCACCACCTTTGTTACCACGTTCAAGAAGATTAAGTTTGGAAGGTTCAAAAACTACCAAGAAAGATGGTCTACTACCAAAAGTACCAGATTATACAATAAGCAAAGGGTTACAGTACGAGCCGGTATCTCTGCAGAAATATCGCCCAATGCAAGATACAGAGTGTGTCTCGAAACTAAACGGCCAGCTCAGCAGTGGCAATTCCAGGTCAGAGTTGCAAGCCAAAACTCCTCGAAGTCCTACAAGCATTTCCTATCAAAGGAGATCGATAAAAGTAAATAGTGGGATGCAAGTTTATCCTCTTAAACTGCCTCAAACACCTGAACGACCAGTGATGGATGGAAATGATTCACATGGCACTAAGGTGGCGGGTAGCACAAATGGAAAAGGATCCCAGATAAGAAGATCGTTGAGAACAATTGGGAAACTCATCAATGGTCCTGACAAGAGGAGCCAACAAATTAAGGTTGAAGTCAAATCACCCATCAAGGGAACTGGCCATACAAATCCTGTAAAATCACCAATTTCGGCCGTTGAAAAGTCAAAAAGGAGACAATCTTTAACAGGGATTCAAGCACCACTGCCAAACTCACGTAGATCTTCACTTGGAGGAAAGCCAGTAGTAGCATATGACAAGGACACAAATGCTAGAACTCCTCCTTCCAATTCAGACACCAAGACTGCAACACGTTGGCTATAG 3111 0.4124 MEDCSRNRTRDFNMASRKAEETAWRRYEATQWLESQVGPLGISNQPTERELISCLRNGRILCNAINKIHPGAVAKVVENQVASESLTWDSQPLPAYQYFENVRNFLVAMEELKLPAFEASDLERDTLEMGSAAKVVNCILTLKSFQELKQMNNQNGSSKHLRSPLSMHSISRMHSRAAAAFPSDSCRHLDLSATLEKMPPVENNFPKREAEIVELLVKQLVDRMFDAKENIDGNIIASLRDEHLAADPIKVFNQIIACCNGEQPPTSFHEDFIKEKGSLPPHIASTPTQSDALSAPDSSKRCQACPGKCKCNQVHLLDMQEKDLLDLKALKLKIKKEFEEMQSQFQGFFNDIGSQIQEMSTKALGYHRVVEENRRLYNMVQDLKGNIRVYCRIRPSFRAESKNIVDFIGEDGSLFILDPTKTLKDGRKLFQFNRVFGPTAGQDEVYKDTQPLIRSVMDGYNVCIFAYGQTGSGKTYTMSGPSGGTYKDMGINYLALNDLFQMSNERNEIMKYDIYVQMVEIYNEQVRDLLGEDKTDNKYPFHFHYFIRSCNDDGMSLPDARLRSVKSTTDVMTLMKLGEVNRAVSSTAMNNRSSRSHSVLTVHVHGKDTSGNSIRSCLHLVDLAGSERVDKSEVTGERLKEAQFINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGHAKTLMFAHVSPEADSFGETVSTLKFAQRVSTVELGAARMNKESSEVMQLKEQVENLKIALANKEAQRAMFNRIKEPHTPLEKPTLVSEKTPLRPRRLSIENCSGAKTDKSVNREDRTGAKSPPLLPRSRRLSLEGSKTTKKDGLLPKVPDYTISKGLQYEPVSLQKYRPMQDTECVSKLNGQLSSGNSRSELQAKTPRSPTSISYQRRSIKVNSGMQVYPLKLPQTPERPVMDGNDSHGTKVAGSTNGKGSQIRRSLRTIGKLINGPDKRSQQIKVEVKSPIKGTGHTNPVKSPISAVEKSKRRQSLTGIQAPLPNSRRSSLGGKPVVAYDKDTNARTPPSNSDTKTATRWL 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01940 1036 SMART kinesin_4 384 724 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca03g01940 1036 MobiDBLite consensus disorder prediction 1019 1036 - -
Cca03g01940 1036 MobiDBLite consensus disorder prediction 952 1036 - -
Cca03g01940 1036 Coils Coil 723 750 - -
Cca03g01940 1036 MobiDBLite consensus disorder prediction 757 831 - -
Cca03g01940 1036 ProSiteProfiles Kinesin motor domain profile. 386 716 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca03g01940 1036 Pfam Kinesin motor domain 392 715 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca03g01940 1036 MobiDBLite consensus disorder prediction 923 937 - -
Cca03g01940 1036 MobiDBLite consensus disorder prediction 908 937 - -
Cca03g01940 1036 ProSiteProfiles Calponin homology (CH) domain profile. 23 147 IPR001715 GO:0005515
Cca03g01940 1036 MobiDBLite consensus disorder prediction 860 889 - -
Cca03g01940 1036 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 386 751 IPR027417 -
Cca03g01940 1036 Gene3D Kinesin motor domain 328 718 IPR036961 -
Cca03g01940 1036 PRINTS Kinesin heavy chain signature 666 687 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca03g01940 1036 PRINTS Kinesin heavy chain signature 617 635 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca03g01940 1036 PRINTS Kinesin heavy chain signature 587 604 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca03g01940 1036 PRINTS Kinesin heavy chain signature 459 480 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca03g01940 1036 PANTHER KINESIN-LIKE PROTEIN KIN-14L 4 1023 - -
Cca03g01940 1036 SUPERFAMILY Calponin-homology domain, CH-domain 20 156 IPR036872 -
Cca03g01940 1036 PANTHER KINESIN-LIKE PROTEIN KLP-3 4 1023 - -
Cca03g01940 1036 MobiDBLite consensus disorder prediction 970 1002 - -
Cca03g01940 1036 Pfam Calponin homology (CH) domain 25 144 IPR001715 GO:0005515
Cca03g01940 1036 Gene3D - 10 174 IPR036872 -
Cca03g01940 1036 SMART ch_5 25 145 IPR001715 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01940 Cca-Chr3 39228823 39236401 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01940 316 716 Calmodulin-binding Proteins AT5G65930 39.759 5.52e-68 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01940 K10406 - gmx:100786642 1719.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01940 03 39228823 39236401 Cca03g01940 03 39228823 39236401 ECH