Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01932 ATGGCGGAATCATTTCTCTTCAGCATCGCAGAGTCACTCATGGTAAAGCTTGCTTCTCGGGCTTACGAAGAAGCTTCTCAGGTGCTGGGTGTATATGATGAACTCAAAGAGTTTAACGGAACTCTCTCAATAGTGAAGGCTGTGCTGTTAGATGCTGACCAAAAGCAGGAGCAGAATCATGAATTGCAAGAATGGCTGAAGCAGATCAAACGTGTCTTCTACGATGCTGAAGATGTGTTGGATGAATTTGAGTGCCAAACACTACGAAAGCAAGTGGTCAAAACTCATGGTACCACCAAAGACAAGGTAGGTCACTTCTTCTCAAGCTCTAATCCACTTGTTTTTCGTTATAGGATGGCTCACAAAATTAAAGATATCAGCAAGAGGCTTGACAAGGTTGCAGCTGATATGCATAAGTTTGGCCTTCAAATAATTCATGTTGACACACGTGTTGTGCATAGGAGAGAATTGACACACTCTGGTGTGGTTAATTCAGATGTTATAggaagagaacaagataaagaaaagattataaagcttttaatgcaggagaattctaatgatgatgataaaagtttatctgttatccccatcgtggggatgggaggcttgggaaagactacacttgcaaagtttgtgttcaatgataagagaacagatgagtatttctcattgaaaatgtgggtgtgtgtttctgatgactttgatattaagcaactaattatcaaaatcatcaattctgctgttgattttgtttctcctgatgctccacctctccaacaaaatttaaatatgttggatccggagcaactgcgaagtcaattgacaaacctacttgtcggtcaaaaattcctacttgtcttagatgacgtgtggaatgaagaccgtgttaaatggattgagttgagaaatttaatacaagtaggtgcagcaggaagtaaaattttagtgactacacgaagtcaaacaattgctttcatgatgggaactgttcccgctcacattttagaaggtctttccccagaagattcattatctttatttgtcaaatgggcatttaaagaaggagaagaggaaaaacatactcatttagtaaatattgggagagaaattgtgaaaagatgcagaggggttccattggctgtgagaacattggggagttcactatttacaaaagttgggacaaatgagtgggaaaatgtgagagacagtgaaatttggactattccacagaaagaaagtgacattttacctgctcttaaattaagttatgatctcatgccttcctatttgaggcaatgctttgcattgttttcccttttcccaaaggattatcaattttctagtgaggagttagctacgctttggtcggcacttggcctccttgcttcacagaacaagaatatgacatcggaagatgttgccaatcaatatttatatgaattattgtcaaaatcatttcttcaagatttttttgaccttggcactatttttttatttaaaatacatgatttggtgcatgatcttgctctatttgttgcaaaggatgagtatctatttatAAATTCTTCCAATCAAAATATTCCTGACAATGTTCGACATCTATCTTTAGCTGACAACAATTTAGTTGATAATTTAAACACCACAAAATCAGTGGTTGTGAGATGCATATTTTTTCCAAATGCTACAGCCGGAGCCAACGTTGAGGCTATGCTAAATATTTGTTTGTCAAAGTTCAAATACTTGCGACTTTTGGATTTAAGTCATTCGACATGCAAAACTTTGCCTCGTTCCATTAGCAAGTTAAAACACTTGAGATATTTCAGCATTGCAAATAATATCAATATCAAGAGTCTCCCCAACTCTATTTGCAAGCTCCAACATTTACAAGCTTTGGACCTTAGTGGATGCACGGAGCTGGAAGCATTGCCCAAAGGATTAAGAAAATTGATCAATCTGCTAGTTTTGGAGATAACCACAAAGCAATCTATTCTTCCCGACAATGAGATTGCCAACTTGAGCATGCTTACATATTTGACTATTAATTCATGCCAAAATGTGGAGTCTATCTTTGGAGGTGTGAAATTCCCTGCTCTTAAAACATTAGCTCTTTGTGACTGTCCAAGTCTAAAGTCTTTGCCACTAAATGTTGAAAAGATTCCTAAATTAGAAACTTTGATAATGAAAAATTGTGGTAATTTGGACTTGGATCCTTGGAAGGACAACCATGAAGAACAAAACACCAATTTGAAGTTAAGATATGTTCAATTTGTGGATTTACCACAACTGGTGGTCTTACCTCAATGGCTTCAAGAAACTGTCAACTCATTACAGTTTTTATCTATTTTTAATTGCAATAATCTCGAAATGCTTCCAGAGTGGTTGTCAACTCTAACTAATTTGAAAGCACTGAGTATAATAGCTTGTCCAAAACTTCTATCTCTCCCAGATAACATTCATCACCTCACCACACTTGAATTTTTGAAGATTGAAGGTTGCTGTGAATTAAGTAGAAAATATCAGCCCCATGTTGGAGAGTTTTGGTCCAAATTATCACATATCAAAAAAGTTGAAATTGACGAACCagaagaaaaggaagagtatgatgaagaggaaTGTTTTGATGAAATAGAGATGAATTGA 2643 0.221 MAESFLFSIAESLMVKLASRAYEEASQVLGVYDELKEFNGTLSIVKAVLLDADQKQEQNHELQEWLKQIKRVFYDAEDVLDEFECQTLRKQVVKTHGTTKDKVGHFFSSSNPLVFRYRMAHKIKDISKRLDKVAADMHKFGLQIIHVDTRVVHRRELTHSGVVNSDVIGREQDKEKIIKLLMQENSNDDDKSLSVIPIVGMGGLGKTTLAKFVFNDKRTDEYFSLKMWVCVSDDFDIKQLIIKIINSAVDFVSPDAPPLQQNLNMLDPEQLRSQLTNLLVGQKFLLVLDDVWNEDRVKWIELRNLIQVGAAGSKILVTTRSQTIAFMMGTVPAHILEGLSPEDSLSLFVKWAFKEGEEEKHTHLVNIGREIVKRCRGVPLAVRTLGSSLFTKVGTNEWENVRDSEIWTIPQKESDILPALKLSYDLMPSYLRQCFALFSLFPKDYQFSSEELATLWSALGLLASQNKNMTSEDVANQYLYELLSKSFLQDFFDLGTIFLFKIHDLVHDLALFVAKDEYLFINSSNQNIPDNVRHLSLADNNLVDNLNTTKSVVVRCIFFPNATAGANVEAMLNICLSKFKYLRLLDLSHSTCKTLPRSISKLKHLRYFSIANNINIKSLPNSICKLQHLQALDLSGCTELEALPKGLRKLINLLVLEITTKQSILPDNEIANLSMLTYLTINSCQNVESIFGGVKFPALKTLALCDCPSLKSLPLNVEKIPKLETLIMKNCGNLDLDPWKDNHEEQNTNLKLRYVQFVDLPQLVVLPQWLQETVNSLQFLSIFNCNNLEMLPEWLSTLTNLKALSIIACPKLLSLPDNIHHLTTLEFLKIEGCCELSRKYQPHVGEFWSKLSHIKKVEIDEPEEKEEYDEEECFDEIEMN 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01932 880 SUPERFAMILY L domain-like 494 846 - -
Cca03g01932 880 Pfam NB-ARC domain 170 424 IPR002182 GO:0043531
Cca03g01932 880 CDD RX-CC_like 2 134 IPR038005 -
Cca03g01932 880 Pfam Rx N-terminal domain 11 98 IPR041118 -
Cca03g01932 880 Gene3D - 423 511 IPR036388 -
Cca03g01932 880 Gene3D Ribonuclease Inhibitor 561 864 IPR032675 -
Cca03g01932 880 Pfam Leucine rich repeat 582 637 IPR001611 GO:0005515
Cca03g01932 880 PANTHER DISEASE RESISTANCE PROTEIN RP 6 737 IPR044974 GO:0006952
Cca03g01932 880 PRINTS Disease resistance protein signature 195 210 - -
Cca03g01932 880 PRINTS Disease resistance protein signature 278 292 - -
Cca03g01932 880 PRINTS Disease resistance protein signature 375 389 - -
Cca03g01932 880 PRINTS Disease resistance protein signature 624 640 - -
Cca03g01932 880 Gene3D - 338 422 IPR042197 -
Cca03g01932 880 Gene3D - 150 331 IPR027417 -
Cca03g01932 880 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 437 IPR027417 -
Cca03g01932 880 Gene3D - 10 124 - -
Cca03g01932 880 PANTHER NBS-LRR DISEASE RESISTANCE PROTEIN 6 737 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01932 Cca-Chr3 39116092 39119002 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01932 193 836 WRKY Transcription Factor Family AT5G45050 21.365 3.41e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01932 - - gmx:100777049 1230.7