Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01929 ATGATCATTCCAAGCCCAACCACTTTTGGACCATTCTCTCCAAACCAATCACATCCAAGCCAAACATTGCAAGCCGATCATCTTCAGATTGACCACTTTCGTGCTAATTTTTACTATACTACCTTCGGCTTATTCTGTCAGGAAAAAATTCGAATTGCTCTCTATGTTCAAAAGGCAGCATTACAATTTATTGATGCTGGTAATCGAGTTGAATACAAAGTATCAAGTGAGGCAAGAGATGCTGGTTTTGGTATTCATCCAGATGAGATTGCTGCTATTGTTCGCGGCCATGATAATAAGACGTTAGATGATTTTGGTGGAGTTGAAGCCATTGTAAGGAAACTGTCAGTTTCTGTGGATGGAGGTGTCAGCGAAGAGAGCATAAATATCAGACAACAGATTTATGGATTCAATCGTTATACCGAAAAACCTTCTAGATCGTTCCTGATGTTTGTGTGGGATGCACTTCAGGACTTAACTCTGATCATTCTCATGGTTTGTTCTGTGGTTTCTATAGGTATAGGGATTGCCACTGAAGGATGGCCAAAGGGAACGTATGATGGTGTGGGAATCATACTCAGTGTATTCTTGGTAGTCATAGTTACAGCTGTCAGTGATTATAAGCAATCCCTGCAGTTCAGGGATTTGGACAAAGAGAAGAAAAAAATATTTGTTCAGGTCACTAGGGATGGGAAAAGACAGAAGATCTCAATTTATGATATAGTAGTTGGTGATGTTGTTCATTTGTCAACTGGGGATCAAGTTCCAGCTGATGGGCTTTTTTTATCAGGGTACTTTCTGCTTATTGATGAATCAAGTTTGTCAGGTGAGAGCGAACCTGTAAATGTAGATGAAGAAAAACCTTTTCTTCTTTCAGGAACCAAAGTGCAGGATGGTCAGGGGAAGATGTTAGTTACAACTGTTGGCATGAGGACTGAATGGGGAAAATTGATGGAGACTCTAAACGAGGGAGGAGAGGATGAGACTCCATTGCAGGTTAAATTAAATGGAGTTGCTACTATTATTGGTAAAATTGGTTTGACATTTGCCATTCTGACATTTGTGGTGTTGACAATAAGGTTTCTGGTTGAAAAAGCACTTCGTGGTGAGTTTGCCAGTTGGTCTTCGGATGATGCAATGAAGCTACTGGACTTCTTTGCTATTGCTGTAACCATAATTGTTGTCGCTGTTCCTGAAGGATTACCTCTGGCTGTCACACTCAGTCTTGCTTTTGCAATGAAAAAATTAATGAATGACAAGGCACTTGTAAGGCATCTTTCTGCATGCGAGACAATGGGTTCAGCTAGTTGCATTTGCACAGACAAGACAGGGACATTGACCACTAATAAAATGGTGGTTAATAAAATATGGATATGCGAAAACGTCATCCAGATTGAAGGTAATGAGAGTGCAGACAAACTGAAAACATGTACATCTGAAGGAGTTCTAAACATCCTTTTACAGGCTACATTTCAAAATACTTCTGCTGAAGTAGTTAAAGGTAAAGATGGAAAGGACACAATATTGGGAACCCCAACAGAATCAGCACTGTTGGAATTTGGCTGCCTTTTGGGCGATGATTTTGATGCTTATTCCAAGCGTAGAGAGTATAAGATACTCAAAGTTGAGCCATTCAATTCAGTCCGAAAGAAAATGTCTGTGCTTGTGGGTCTTCCTGATGGAGGGATCCGAGCTTTCTGCAAAGGTGCATCAGAAATAATATTAAAAATGTGTGACAAAATTATTGATTGCAATGGGGAAGTTGTTGATCTTCCCCAAGACCGGGCAAATAATGTCTCCGATGTTATAAATGGCTTTGCCTCTGAAGCTTTGAGAACTCTCTGTTTGGCCTTCAGAGACATAAATGAAACCCATGAGGAAACCAACATTCCAGATGGTGGCTATACTCTAATAGCCTTAGTAGGAATCAAGGATCCAGTACGCCCTGGGGTTAAGGAAGCTGTTCAAACTTGTATAGCTGCTGGAATAACTGTCCGAATGGTTACTGGTGATAACATAATTACAGCTAGAGCTATAGCTAAAGAATGTGGTTTACTTACCGAGGGTGGTGTAGCCATAGAAGGTCCAGATTTTCGTGATTTGTCTCCTGAGCAAATGAATCAAGTCATACCAAAAATTCAGGTGATGGCACGATCCTTACCGCTTGACAAGCACAAGTTAGTAACGAATTTGAGGAATATGTTTGGTGAGGTTGTTGCTGTTACTGGAGATGGAACTAATGATGCTCCTGCTCTGTGTGAGGCTGACATTGGACTTGCAATGGGCATAGCGGGAACTGAGGTTGCCAAAGAAAATGCTGATGTAATTATAATGGATGATAACTTCACGACTATTGTCAATGTTGTCAAATGGGGACGTGCAGTATATATAAACATTCAAAAATTTGTGCAGTTTCAATTGACAGTTAATGTTGTTGCTCTGGTTATCAACTTCGTTTCTGCATGCATCACTGGATCTGCTCCACTCACGGCTGTTCAGTTGCTTTGGGTCAACTTGATCATGGACACTCTTGGTGCATTGGCCCTGGCTACTGAACCTCCTAACGATGGACTTTTGAAAAGACCCCCAGTTGCAAGGGGAGCAAACTTTATCACCAAACCAATGTGGAGGAATATCATTGGTCAAAGTATATATCAATTAATTATCCTTGCGATTCTAAATTTTGACGGGAAGAGGCTACTTGGAATTAGTGGTTCAGATGCAACAAAAGTGCTTAACACTTTGATATTCAACTCCTTTGTATTTTGCCAGGTGTTTAATGAGATAAACAGTAGAGATATTGAAAAGATAAACATATTCAGAGGCATGTTTGACAGCTGGATATTTTTGTTGATAATTTTCGCCACCTTGGCATTCCAAGTGGTGATAGTTGAATTCCTTGGAACGTTAGCCAGCACTGTGCCTCTAAACTGGCAATTCTGGTTACTAAGTTTGTTAATCGGAGCAGTTAGCATGCCCATAGCTGCTATCCTCAAGTGCATCCCAGTAGAAAGAGATACTAGTAAGCAGCACCATGATGGTTATGAGGCACTGCCATCTGGTCCCGAGCTGGCATAA 3078 0.4077 MIIPSPTTFGPFSPNQSHPSQTLQADHLQIDHFRANFYYTTFGLFCQEKIRIALYVQKAALQFIDAGNRVEYKVSSEARDAGFGIHPDEIAAIVRGHDNKTLDDFGGVEAIVRKLSVSVDGGVSEESINIRQQIYGFNRYTEKPSRSFLMFVWDALQDLTLIILMVCSVVSIGIGIATEGWPKGTYDGVGIILSVFLVVIVTAVSDYKQSLQFRDLDKEKKKIFVQVTRDGKRQKISIYDIVVGDVVHLSTGDQVPADGLFLSGYFLLIDESSLSGESEPVNVDEEKPFLLSGTKVQDGQGKMLVTTVGMRTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKIGLTFAILTFVVLTIRFLVEKALRGEFASWSSDDAMKLLDFFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSASCICTDKTGTLTTNKMVVNKIWICENVIQIEGNESADKLKTCTSEGVLNILLQATFQNTSAEVVKGKDGKDTILGTPTESALLEFGCLLGDDFDAYSKRREYKILKVEPFNSVRKKMSVLVGLPDGGIRAFCKGASEIILKMCDKIIDCNGEVVDLPQDRANNVSDVINGFASEALRTLCLAFRDINETHEETNIPDGGYTLIALVGIKDPVRPGVKEAVQTCIAAGITVRMVTGDNIITARAIAKECGLLTEGGVAIEGPDFRDLSPEQMNQVIPKIQVMARSLPLDKHKLVTNLRNMFGEVVAVTGDGTNDAPALCEADIGLAMGIAGTEVAKENADVIIMDDNFTTIVNVVKWGRAVYINIQKFVQFQLTVNVVALVINFVSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLLKRPPVARGANFITKPMWRNIIGQSIYQLIILAILNFDGKRLLGISGSDATKVLNTLIFNSFVFCQVFNEINSRDIEKINIFRGMFDSWIFLLIIFATLAFQVVIVEFLGTLASTVPLNWQFWLLSLLIGAVSMPIAAILKCIPVERDTSKQHHDGYEALPSGPELA 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01929 1025 Gene3D - 122 322 - -
Cca03g01929 1025 SUPERFAMILY Calcium ATPase, transduction domain A 224 320 IPR008250 -
Cca03g01929 1025 MobiDBLite consensus disorder prediction 1 20 - -
Cca03g01929 1025 Pfam Cation transport ATPase (P-type) 495 581 - -
Cca03g01929 1025 PRINTS P-type cation-transporting ATPase superfamily signature 661 671 - -
Cca03g01929 1025 PRINTS P-type cation-transporting ATPase superfamily signature 742 761 - -
Cca03g01929 1025 PRINTS P-type cation-transporting ATPase superfamily signature 270 284 - -
Cca03g01929 1025 PRINTS P-type cation-transporting ATPase superfamily signature 439 453 - -
Cca03g01929 1025 PRINTS P-type cation-transporting ATPase superfamily signature 639 650 - -
Cca03g01929 1025 PRINTS P-type cation-transporting ATPase superfamily signature 766 778 - -
Cca03g01929 1025 PANTHER CALCIUM-TRANSPORTING ATPASE 46 1009 - -
Cca03g01929 1025 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 711 830 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca03g01929 1025 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 191 461 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca03g01929 1025 Pfam E1-E2 ATPase 224 417 - -
Cca03g01929 1025 ProSitePatterns E1-E2 ATPases phosphorylation site. 441 447 IPR018303 -
Cca03g01929 1025 Gene3D - 449 646 IPR023299 GO:0000166
Cca03g01929 1025 SUPERFAMILY Calcium ATPase, transmembrane domain M 106 1003 IPR023298 -
Cca03g01929 1025 SMART Cation_ATPase_N_a_2 104 176 IPR004014 -
Cca03g01929 1025 SFLD C1.7: P-type atpase like 421 794 - -
Cca03g01929 1025 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 99 1004 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Cca03g01929 1025 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 445 651 IPR023299 GO:0000166
Cca03g01929 1025 Gene3D - 154 1001 - -
Cca03g01929 1025 Gene3D - 436 787 IPR023214 -
Cca03g01929 1025 SUPERFAMILY HAD-like 438 847 IPR036412 -
Cca03g01929 1025 CDD P-type_ATPase_Ca_PMCA-like 131 875 - -
Cca03g01929 1025 Pfam Cation transporting ATPase, C-terminus 827 1000 IPR006068 -
Cca03g01929 1025 PRINTS H+-transporting ATPase (proton pump) signature 599 617 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca03g01929 1025 PRINTS H+-transporting ATPase (proton pump) signature 774 799 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca03g01929 1025 PRINTS H+-transporting ATPase (proton pump) signature 742 758 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca03g01929 1025 Pfam Cation transporter/ATPase, N-terminus 106 171 IPR004014 -
Cca03g01929 1025 PANTHER CATION TRANSPORTING ATPASE 46 1009 - -
Cca03g01929 1025 SFLD p-type atpase 421 794 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01929 Cca-Chr3 39056807 39063998 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01929 48 1022 Primary Pumps ATPases AT3G57330 73.744 0.0 1487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01929 K01537 - gmx:100783489 1775.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01929 03 39056807 39063998 Cca03g01929 03 39056807 39063998 ECH