Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01924 ATGGATCACAGACTGAAAAACAAGGACTCACTCTCTTACTCCACTCTCTTCAATCTCGAGTCTTTGATGAACTTTCAACTTCCAGAACAAGATGATGATTTTGATTATTATGGGAATAGTAGTCAGGATGAGAGCAGAGACAGCCAAGTAGGTGGGGGGATTGCAAATCACAGTAATGGGAATGTGCATGAAAGGGAGGTGAATTTGTTGAAGAAGAGGAGGTGGTCTATGAACAGTGACAACGAGGAGAAGAGTGGTTTTTACGGGGCACACATGACGGAGGAGCGGTATCGATCGATGCTGGGAGAGCATATTCAGAAATACAAGAGGAGCACGGGGTCAAAAGCTCGCAAGTCTGGGAATGAGCGCAGGGGAGGATTACATGCTGCGGAGAATACATTGGAATGGATGAATGATTCCAGTTCTCAGAAACCAGGAAATTACCGCGATGCAGATTTCACACAGCAATATGGCACTGATAGGATTATGTATGAACCTGCATCTTTGGATATTGGGGATGGAATCATTTACCGGATTCCTCCAATCTATGATAAGTTGGCTGGAGCTCTGAACCTCCCAAGCTTCTCAGATATCCATGTTGAGGATTTTTACTTAAAGGGTACCTTGGATTTGGGCTCCTTGGCTGAAATGATGGCAGCTGATAAAAGATTTGGGAACAGAAACCGAGCAGGCATGGGGGAGGCAATACCCCAATATGAATCACTGCAGGCACGGCTGAGGGTCATGTCAGCTTCTAATTCTGCTCATAAATTTGGTCTGAAAGTATCTGATGCTGGTTTGAATTCCTCCATTCCAGAGGGGGCAGCAGGAAGCATAAGACGATCTATTTTGTCTGAGGGTGGTGTATTGCAGGTTTATTATGTGAAGGTTTTGGAGAAAGGTGACACCTATGAGATCATTGAAAGAAGCCTACCTAAGAAGCAGAAAGTGAAGAAAGACCCTGCTCTGATAGAGAAGGAGGAAATGGAAAGATGTGGAAAAATTTGGGTAAATATTGTAAGAAGAGACATACCAAAGCATCATAGGAACTTTACTACTTTTCATCGAAAGCAGCTCATCGATGCGAAGAGGGTCTCAGAGACTTGTCAAAGAGAGGTTAGAATGAAAGTTAGTAGATCCCTTAAATGGACAAGGACTGCTAGTATGCGCACCCGGAAACTAGCTAGAGACATGTTGCTGTTCTGGAAACGAATAGATAAGGAGATGACAGAAGTGAGGAAGAGGGAGGAAAAAGAAGCTGCTGAAGCTTTGAGGCGTGAACAGGAACTTCGAGAGGCAAAGAGGCAGCAGCAAAGGCTTAATTTTCTTATACAACAAACTGAGCTGTACAGTCACTTTATGCAGAACAAGTCAAATTTACTATCTTCAGAAACTTTACCCAAGGTGGATGAGGAAACAAATGATCAAGAGGCGCTGATTGACTCTTCAGATGCTAGGCCCGACGAGGAGGAAGATCCTGAAGAGGCTGAACTGAAGATGGAAGCTTTGAAGGCTGCACAAGAAGCAGTTTCTAAGCAGAGAAGGCTGACAAGTGCTTTTGACACTGAATGCTTGAGGCTGCGCCAAGCTGGTGAAACTGATTCACTTCCACCAGATGTTGCTGGAGCGAGTAATATTGATTTGCAAACCCCCTCTACCATGCCAGTTGCATCCACGGTTCGGACACCTGAATTATTTAAAGGGGTTCTTAAAGAATATCAGCTGAAAGGTCTTCAGTGGCTAGTTAATTGTTATGAGCAGGGTTTAAATGGTATTCTAGCAGATGAGATGGGACTTGGAAAGACGATTCAGGCTATGGCTTTTTTGGCCCATTTAGCTGAGGAAAAAAATATATGGGGACCTTTTCTAGTTGTTGCACCTGCTTCTGTATTAAATAATTGGAATGAGGAACTTGAGCGCTTCTGCCCTGAACTGAAACGACTTCCATACTGGGGTGGGCTTTCAGAGCGGACAGTACTTCGGAAAAGTATTAACCCAAAGGATCTTTATCGTAGGGAAGCTAAATTTCACATTCTCATCACAAGCTACCAGCTATTAGTATCCGATGAGAAGTATTTTCGTCGTGTGAAATGGCAGTATATGGTTTTAGATGAAGCCCAGGCAATCAAAAGTGCAACCAGTATAAGGTGGAAGACACTCCTCAGTTTTAATTGTCGGAATCGCCTACTGTTGACTGGTACACCCATTCAGAATAATATGGCCGAGTTATGGGCTCTCCTTCACTTCATCATGCCAACTTTATTTGACAGCCATGAGCAGTTTAATGAGTGGTTTTCTAAAGGAATTGAGAACCATGCAGAACATGGGGGTACTTTGAATGAGCACCAACTTAATCGATTGCATTCAATTCTAAAGCCTTTCATGCTGCGGCGTGTTAAAAAGGATGTGATTTCTGAGCTGACTACAAAAACTGAGGTTACTGTGCATTGTAAGCTGAGTTCTCGGCAGCAGGCTTTCTATCAGGCAATTAAGAACAAGATATCTCTTGCCGAGTTGTTTGATAGTAATCGTGGGCAGCTCAATGAGAAGAGAATTCTGAATTTAATGAACATTGTTATTCAACTAAGAAAGGTTTGCAACCATCCAGAGTTGTTTGAAAGGAGTGAGGGAAGCACTTACCTTTACTTTGGAGACATTCCGAATTCCCTTCCACCTCCACCATTTGGGGAGTTGGAGGATGTATATTATTCTGGTGGTCACAACCCCATATCATATGAGATACCAAAACTTGTCTATCAAGAAATTATGCAAAGTTCTGAAACTCCCAGTTCAGTTGTTGGTCGTGGTGTCTCCAGAGAATCTTTTCAGAAATGTTTTAATATTTTTAGACCAGAAAATGTTTATAGATCTATCTTTGCGGAAGATATGTACATTAAAAGTGGACACTTTGGTTTTACCCATTTGATGGATTTGTCTCCACACGAAGTGACATTTCTGGCTACTGGTTCTTTTATGGAGCGACTGTTATTTTCTATGATAAGACATGAACAAAAATTCATTGACGAAGCTGTAGACTTTCTAATGGAGACTGTAGATGATGATCCAGAATGTGGTTACCTTGAGAAAGATAAAGTGAGAACAGTTACACGAATGTTATTGGTGCCATCGAGATCTGAGACCCAGTTTCTTCTAAAAAGATTGCCAGTTGGTCCCAGCCATGCACCATTTGAGGCCTTGGTTGTCCCACACCAAGATAGGATTTTTTCAAATGCTAGGCTTCTTCACTCTGCTTACACATATATCCCACAAAGTAGAGCTCCCCCAATTGGTGCTCACTGCTCAGATAGAAACTTCTATTATAAAATGATTGAAGAATTACATGATCCCTGGGTTAAGAGGTTGTTTGTGGGATTTGCACGTACATCTGATTACAATGGTCCTAGAAAGCCAGATGGTCCTCATCATTTAATTCAAGAGATAGATTGTGAACTACCTGTTTCTCAGCCCGCTCTTCAATTAACGCACAATATTTTTGGGTCTTCTCCACCTATGCGGAATTTCGACCCAGCAAAACTGCTCACTGACTCTGGAAAGCTCCAAACACTTGATATATTATTGAAACGGTTACGAGCAGAAAATCATCGTGTTCTCTTATTTGCTCAGATGACCAAGATGCTGAATATTTTGGAGGACTACATGAACTATAGAAAATATAGGTATTTTAGACTTGATGGATCATCTACTATTCAGGATCGCAGAGACATGGTCAGAGACTTTCAGCATAGGAGTGATATTTTTGTGTTCTTACTGAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACAGCTGCTGACACAGTCATATTTTATGAGAGTGATTGGAATCCAACTTTGGATCTACAGGCAATGGATAGAGCTCATCGTCTGGGTCAGACAAAAGATGTTACTGTATACCGACTTATATGTAAAGAGACAGTTGAAGAGAAGATTCTTCTTAGAGCTAGTCAGAAAAGTACTGTACAGAACCTTGTCATGACTGGCGGTTCTGTTGGTGGTGATCTTTTAGCTCCTGAGGATGTTGTATCTTTGCTTCTAGATGATGTTCAGTTGGAGCAGAAATTAAAGGAAATCCCTCTCCAGGTAAAGGATAAACAAAAGAAAAAACAACCAATGAGGGGTATTCGGGTAAATGAAGAAGGTGATGCATCGCTGGAAGATCTAACAAACTCTGTAGCACAGGGTACTTCAGATTATGATCTTTCCGTGGATACAGAGGGATCAAAGTCCAGTAATAAAAAGAGAAAAGCCACCGCAGATAAGCCAACTTCCAGGCCAAAGAATTCTCAAAAAATGAGTGAATTTAGTACTATGCCTACGGACAACGAATTGGATGATATTGATCCAGTGGGTCAGAAACCGAAGAGACCGAAGAGGATAAAGAAGAATGTGAATGAAAAGTTTGAAGATGCTTTTACTGGGACAGCTACACTGGTACCAGAGCCGACCCAATTTCCACCTACACGTGATTTTAGTGCCGGAGGTTCTAAAGCAGAATCAGGCCAAGACAACTGA 4533 0.4198 MDHRLKNKDSLSYSTLFNLESLMNFQLPEQDDDFDYYGNSSQDESRDSQVGGGIANHSNGNVHEREVNLLKKRRWSMNSDNEEKSGFYGAHMTEERYRSMLGEHIQKYKRSTGSKARKSGNERRGGLHAAENTLEWMNDSSSQKPGNYRDADFTQQYGTDRIMYEPASLDIGDGIIYRIPPIYDKLAGALNLPSFSDIHVEDFYLKGTLDLGSLAEMMAADKRFGNRNRAGMGEAIPQYESLQARLRVMSASNSAHKFGLKVSDAGLNSSIPEGAAGSIRRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPALIEKEEMERCGKIWVNIVRRDIPKHHRNFTTFHRKQLIDAKRVSETCQREVRMKVSRSLKWTRTASMRTRKLARDMLLFWKRIDKEMTEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNLLSSETLPKVDEETNDQEALIDSSDARPDEEEDPEEAELKMEALKAAQEAVSKQRRLTSAFDTECLRLRQAGETDSLPPDVAGASNIDLQTPSTMPVASTVRTPELFKGVLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGLSERTVLRKSINPKDLYRREAKFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSATSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVISELTTKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKRILNLMNIVIQLRKVCNHPELFERSEGSTYLYFGDIPNSLPPPPFGELEDVYYSGGHNPISYEIPKLVYQEIMQSSETPSSVVGRGVSRESFQKCFNIFRPENVYRSIFAEDMYIKSGHFGFTHLMDLSPHEVTFLATGSFMERLLFSMIRHEQKFIDEAVDFLMETVDDDPECGYLEKDKVRTVTRMLLVPSRSETQFLLKRLPVGPSHAPFEALVVPHQDRIFSNARLLHSAYTYIPQSRAPPIGAHCSDRNFYYKMIEELHDPWVKRLFVGFARTSDYNGPRKPDGPHHLIQEIDCELPVSQPALQLTHNIFGSSPPMRNFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYFRLDGSSTIQDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLEQKLKEIPLQVKDKQKKKQPMRGIRVNEEGDASLEDLTNSVAQGTSDYDLSVDTEGSKSSNKKRKATADKPTSRPKNSQKMSEFSTMPTDNELDDIDPVGQKPKRPKRIKKNVNEKFEDAFTGTATLVPEPTQFPPTRDFSAGGSKAESGQDN 1510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01924 1510 Pfam SNF2-related domain 585 872 IPR000330 GO:0005524|GO:0140658
Cca03g01924 1510 MobiDBLite consensus disorder prediction 1413 1428 - -
Cca03g01924 1510 MobiDBLite consensus disorder prediction 1368 1510 - -
Cca03g01924 1510 MobiDBLite consensus disorder prediction 108 129 - -
Cca03g01924 1510 MobiDBLite consensus disorder prediction 471 495 - -
Cca03g01924 1510 MobiDBLite consensus disorder prediction 1390 1412 - -
Cca03g01924 1510 SMART helicmild6 1214 1297 IPR001650 -
Cca03g01924 1510 MobiDBLite consensus disorder prediction 108 149 - -
Cca03g01924 1510 Pfam Helicase conserved C-terminal domain 1188 1297 IPR001650 -
Cca03g01924 1510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 800 1366 IPR027417 -
Cca03g01924 1510 SMART ultradead3 566 761 IPR014001 -
Cca03g01924 1510 Coils Coil 407 446 - -
Cca03g01924 1510 PANTHER HELICASE SRCAP-RELATED 16 1464 - -
Cca03g01924 1510 MobiDBLite consensus disorder prediction 1429 1446 - -
Cca03g01924 1510 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1188 1372 IPR001650 -
Cca03g01924 1510 MobiDBLite consensus disorder prediction 33 62 - -
Cca03g01924 1510 Gene3D - 566 807 IPR038718 -
Cca03g01924 1510 MobiDBLite consensus disorder prediction 134 149 - -
Cca03g01924 1510 MobiDBLite consensus disorder prediction 1368 1389 - -
Cca03g01924 1510 MobiDBLite consensus disorder prediction 41 56 - -
Cca03g01924 1510 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 582 753 IPR014001 -
Cca03g01924 1510 ProSiteProfiles DBINO domain profile. 335 460 IPR020838 GO:0003677
Cca03g01924 1510 CDD SF2_C_SNF 1176 1308 - -
Cca03g01924 1510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 554 798 IPR027417 -
Cca03g01924 1510 Gene3D - 1155 1424 IPR027417 -
Cca03g01924 1510 Pfam DNA-binding domain 330 459 IPR020838 GO:0003677
Cca03g01924 1510 Gene3D - 808 877 IPR027417 -
Cca03g01924 1510 PANTHER CHROMATIN-REMODELING ATPASE INO80 16 1464 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01924 Cca-Chr3 38971200 38985369 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01924 591 880 RAD5 or RAD16-like Gene Family AT5G43530 29.167 4.18e-26 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca03g01924 SNF2_N 4.3e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01924 K11665 - gmx:100780615 2754.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01924 03 38971200 38985369 Cca03g01924 03 38971200 38985369 ECH