Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01908 ATGGATCGGGCGGCGTTGACGATTGGACCGGCCATGGACATGCCGATCATGCACGACAGCGACCGTTACGATCTGGTCCGCGACATCGGGTCGGGGAATTTCGGCGTAGCGAGGTTGATGCAGGATAAGCAAACCAAGGAACTCGTTGCCGTGAAGTACATCGAAAGGGGTGATAAGattgatgaaaatgtaaagagggaaatcattaatcacaggtctctcagacatcctaacattgttaggtttaaagaggttattttaacacctactcatcttgctattgtaatggaatatgcatctggaggagagctctttgcgagaatctgcaatgctggacgttttactgaggacgagGCTCGATTCTTCTTTCAGCAACTCATATCTGGAGTCAGCTATTGCCATGCTATGCAAGTATGTCATCGGGACTTAAAGCTGGAAAACACTTTGCTGGATGGAAGCCCGGCACCTCGTTTGAAGATATGCGATTTTGGGTACTCCAAGTCTTCAGTGCTTCATTCACAACCAAAGTCAACTGTGGGAACTCCCGCATATATTGCTCCAGAAGTATTGCTGAAACAAGAGTATGATGGCAAGGATCTAAAGCGATGA 609 0.3514 MDRAALTIGPAMDMPIMHDSDRYDLVRDIGSGNFGVARLMQDKQTKELVAVKYIERGDKIDENVKREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFARICNAGRFTEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKQEYDGKDLKR 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01908 202 Gene3D Transferase(Phosphotransferase) domain 1 99 200 - -
Cca03g01908 202 PANTHER SERINE/THREONINE KINASE 14 198 - -
Cca03g01908 202 Pfam Protein kinase domain 23 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01908 202 SMART serkin_6 23 201 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01908 202 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Cca03g01908 202 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2E 14 198 - -
Cca03g01908 202 SUPERFAMILY Protein kinase-like (PK-like) 15 197 IPR011009 -
Cca03g01908 202 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Cca03g01908 202 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Cca03g01908 202 ProSiteProfiles Protein kinase domain profile. 23 202 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01908 Cca-Chr3 38694771 38696769 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01908 22 197 CBL-interacting serine-threonine protein kinases AT2G26980 43.850 3.58e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Cca03g01908 Pkinase 2.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01908 K14498 - gmx:100806949 396.356