Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01906 ATGTCCACTTTGAAACTGAAGAGGAGCCTGACCAGGAAGTTATCTCGAAGGACTGAACCAATGAGGAAGCTAAAGTCCTCAAGATCAATCAAGCTTGCAACTGTCAAGGGCCAAAAATCATCAAGGAAGCTACATGAATCTAGTTATGGAAGTGAAGACCAGAATTGGAGAATTACTAGTGATGCTGGTAACAAACCCCAGAGAGTCATTACCAGAAGGTTAAGCTTGAAGCCTGTGAGGATCTTAGCAAAGATGGCCACTTTCAAATCAAGGAATTCTTCTATTGAGAGAGGCAATCAGATATCTGAATCCCCAGACAGAAGCTTGCTTAGAGCCACTTGTTCTTCTGCTCTCAAGGATTCCCATTTTCCTGATCACATTGACCTCCCTCAAGAGGGAAGTGACTCTCAAGGAGTGTCATCTGTGAAGGTTTGTCCATATTCTTATTGCTCTCTTCATGGTCACCGCCATGGCGATCAGCCTCCTTTGAAGCGATTTGTGTCGATTAGGAGGCGTGTGTTGAAGAGCCAAAAGCCAACGAAAATGGATCGTCAGCCCTTTACTAAATCAAAGCAAATTGGTAATGCAAGGAAATCTTCTCAGAAGACTCAAACTGTCCACAGTGGAGATGGCAGATCTCATTTTCAGAACAAGAAAAAGCTGGTCAGGGACTCATGTATTAGGCCTCATAGCACTCCAGCATCCACAGTTACTGAAGGCGTAGAATCAACATCAACAGATGTAGACGAGTTTTCTGCTTCTGGTTTTGAGATATTGGAGGGAGGAGTAACCAACACTGGCAACACAGGCAAAAATATGGAGACAGATTATGAAGTATTGAAGATGAGTTCTGTGCAGAAAGAGGCTACACATGCTAGCACTACTGATATGACTAGTGGAATACAGGAAAGAGAACGAAAGTATATAAAAATGTGGCAGTTGATGTATAAGCATGCTGTGTTAAGTAACACTGGTGAATGTGAAAATAAGCTTCCCTTTGATGGGAAGAAGGAAGGAAGAGAGCAAGATTCCCTTGCAATTAATGAAGTGAATAACTCTTCTTGTCATGATGATTGCCATACGGATCAGGATATGGATGATGCAAATAAGAATGCGATTGAGCTGGTGCAGAAAGCATTTGATGAAATTCTTCTCCCAGAGCCTGAAGACCTCTTTTCTGATGATCATGTCAAATCTGAAGGCAATGATTCAGATGAGGTACCCTTAGAAGAGAGTGAAGGTCGGAGAGAAATGAATACCTCAACATCCACAGAATCTCCAAAAGCACAGAGCATGGAGAACAAACCAGACCAAAAAACACCAAAAAGCTGGAGCAATTTGAAAAAGTTGATCCTCTTGAGAAGGTTTGTAAAGGCATTAGATAAGGTAAGAAACATCAATCCTCAAAGACCAAAACGTGTTCCTTCTGATGCTAACTTGGAAATGGAAAAAGTTTCTCTCAAGCACCAAACAGCAGAAGAGAAAAAGAATGCTGAGGAATGGATGCTCGACTATGCACTTCAAAAGGTTATTTCTAAACTTGCACCTGCTCAAAGACAAAGAGTGACACTTCTAGTAGAAGCTTTTGAAAAAATTCTGCCATTTCAAGATGCTGAGAATGGTCCACGGTTTTCTGCGATGATGAAATCTCTAGCAAACCCAATTCAACCTCTTGATTATTCCTCAAACTATAGCAAGGAAGAGGCATCATTTTCTCATGATAGTACTATGGAACTGGCAGATAATGCTGGTGATGATCCAATGTTAGAACTGCACGATGCTACTATCAAAGAAAGATATCTTGATGATCCTGGGATGCAGACAATCAAAGTCAAGAACATGCCTGCATTTGGAGCTTCCGAAGAAGACTTGAATGGAAAGCAAAGTATAGTTGGCAGTTATGGTAATGGGGAGAAGATATCAACCGCCAATGACAATATTTATCTAGGAGAGATCAAAGATACTACATCAAGTTCCTTAAATGAGCCAGATGAAATTATAAGCTGTCATGAGGAGGCTCCAACCAATGAAATAGTCACTGATGTTTCAGAAGATTTGCTATCCAATGAAATAGTCATAGAAAATCCACTCATCAAATCCGAGCCACCTGGAAGAGATGTTGAAACCAAGAATCTGATTGATGAAAATGGGGAACAATTTTCCATGTCCAAAAGTTTAATCCTAGAAGGTCTAGTTAGATCACTCAGATCTAATTTGATTGGTTCAGAAGCACCTGCAAATGAACCAACAACCGACAGAAAAGAAGGAATTGAAAATGTTAAGCCAGAAAGTGAGACTCTTGAAGAGTTCCCTACAAAGGAACAATCTAAAGCTCCTATGAGTGCTGTTGTAGAACCTGAGGCCTCTGTAGAGAAACAAAGCAACACAGGATTGTGGTACTTGGTGTATAAGCACATGGTATCAAATATGGCTGAAAACAATTCCAATTCACAAATTGATGGGGCAGATGAGAAAGAGTCAGGGATTGATGGCAACAGAACTAGGGGAACTTCCACCTCTAATGAAAGTACACCCACAACTCATCAAGATATGCAATTCGAGGACCATCTTGTAGCTGATCCAGAAGTTGAACAAAAAAAGAGTGAAGCCATCAAGATGGTAGAAGAAGCAATTGATTCAATCCTTCCAGATGATCAGAATTACTTAGCAGACAAGAAGTCACTCACAGGCAACACAATTTCAGACAACTTCAAACAATCCAGCCGAATTGAAAGGGTGTATGGTGAAGGCCTGAACCAAAAAGAAGAAACGATGGAATCTGGAAATGGAGTAATCCAAGAACAAGAAGAAGAATCAACACCAAAGGAGCAAAAAAAACCAAACCAGCAATTGCCAAGAAGCTGGAGCAATCTTAAAAAGGTGATCCTGCTTAGGAGATTCATCAAGTCATTGGAAAAAGTAAGAAAGTTCAACCCAAGAGGCCCCAGATATCTGCCTGTAGAGCCTGATTCAGAAGCCGAGAAAGTTAACTTAAGGCATCAAGACATGGAAGAAAGAAAAGGCACCGAAGAATGGATGCTTGATTATGCACTTCGACAGGTTGTTTCCAAATTAACCCCGGCTAGGAAAAGAAAAGTTGAGCTGCTAGTAGAAGCTTTTGAAACTGTCATGCCAACTATAAAAAATTGA 3150 0.4073 MSTLKLKRSLTRKLSRRTEPMRKLKSSRSIKLATVKGQKSSRKLHESSYGSEDQNWRITSDAGNKPQRVITRRLSLKPVRILAKMATFKSRNSSIERGNQISESPDRSLLRATCSSALKDSHFPDHIDLPQEGSDSQGVSSVKVCPYSYCSLHGHRHGDQPPLKRFVSIRRRVLKSQKPTKMDRQPFTKSKQIGNARKSSQKTQTVHSGDGRSHFQNKKKLVRDSCIRPHSTPASTVTEGVESTSTDVDEFSASGFEILEGGVTNTGNTGKNMETDYEVLKMSSVQKEATHASTTDMTSGIQERERKYIKMWQLMYKHAVLSNTGECENKLPFDGKKEGREQDSLAINEVNNSSCHDDCHTDQDMDDANKNAIELVQKAFDEILLPEPEDLFSDDHVKSEGNDSDEVPLEESEGRREMNTSTSTESPKAQSMENKPDQKTPKSWSNLKKLILLRRFVKALDKVRNINPQRPKRVPSDANLEMEKVSLKHQTAEEKKNAEEWMLDYALQKVISKLAPAQRQRVTLLVEAFEKILPFQDAENGPRFSAMMKSLANPIQPLDYSSNYSKEEASFSHDSTMELADNAGDDPMLELHDATIKERYLDDPGMQTIKVKNMPAFGASEEDLNGKQSIVGSYGNGEKISTANDNIYLGEIKDTTSSSLNEPDEIISCHEEAPTNEIVTDVSEDLLSNEIVIENPLIKSEPPGRDVETKNLIDENGEQFSMSKSLILEGLVRSLRSNLIGSEAPANEPTTDRKEGIENVKPESETLEEFPTKEQSKAPMSAVVEPEASVEKQSNTGLWYLVYKHMVSNMAENNSNSQIDGADEKESGIDGNRTRGTSTSNESTPTTHQDMQFEDHLVADPEVEQKKSEAIKMVEEAIDSILPDDQNYLADKKSLTGNTISDNFKQSSRIERVYGEGLNQKEETMESGNGVIQEQEEESTPKEQKKPNQQLPRSWSNLKKVILLRRFIKSLEKVRKFNPRGPRYLPVEPDSEAEKVNLRHQDMEERKGTEEWMLDYALRQVVSKLTPARKRKVELLVEAFETVMPTIKN 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01906 1049 MobiDBLite consensus disorder prediction 419 443 - -
Cca03g01906 1049 MobiDBLite consensus disorder prediction 813 852 - -
Cca03g01906 1049 Coils Coil 918 938 - -
Cca03g01906 1049 MobiDBLite consensus disorder prediction 832 851 - -
Cca03g01906 1049 MobiDBLite consensus disorder prediction 748 772 - -
Cca03g01906 1049 PANTHER CALMODULIN BINDING PROTEIN PICBP 34 1047 - -
Cca03g01906 1049 MobiDBLite consensus disorder prediction 392 418 - -
Cca03g01906 1049 Pfam Plant calmodulin-binding domain 430 534 IPR012417 GO:0005516
Cca03g01906 1049 Pfam Plant calmodulin-binding domain 942 1045 IPR012417 GO:0005516
Cca03g01906 1049 MobiDBLite consensus disorder prediction 742 790 - -
Cca03g01906 1049 MobiDBLite consensus disorder prediction 229 246 - -
Cca03g01906 1049 MobiDBLite consensus disorder prediction 212 226 - -
Cca03g01906 1049 MobiDBLite consensus disorder prediction 186 211 - -
Cca03g01906 1049 MobiDBLite consensus disorder prediction 175 246 - -
Cca03g01906 1049 SMART CaM_binding_2 931 1045 IPR012417 GO:0005516
Cca03g01906 1049 SMART CaM_binding_2 420 534 IPR012417 GO:0005516
Cca03g01906 1049 MobiDBLite consensus disorder prediction 1 64 - -
Cca03g01906 1049 MobiDBLite consensus disorder prediction 917 951 - -
Cca03g01906 1049 PANTHER CALMODULIN-BINDING PROTEIN-RELATED 34 1047 IPR044681 GO:0005516
Cca03g01906 1049 MobiDBLite consensus disorder prediction 392 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01906 Cca-Chr3 38681211 38685789 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01906 109 541 Calmodulin-binding Proteins AT5G04020 29.654 2.23e-29 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01906 - - gmx:100804484 1565.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01906 03 38681211 38685789 Cca03g01906 03 38681211 38685789 ECH