Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01897 ATGAACCATGTTTTCTCAATGGCAGTTACCACAGTTGATTCTGGTAGCAAGGCTTTAGAGTTTCTGGGGTTGAATGAGAATGATGAGAGCAACCCAAGTACACCATCTGTTTCTCCCAACAATCATCATCAGGAGGTGGAGGTGAATCTTGTTATAACTGATTACTGTATGCCTGGAATGACAGGCTATGACTTGCTTAAGAAAATCAAGGAATCTTCATCTTTGAGAAACATACCAGTGGTGATCATGTCATCTGAGAATGTGCCTTCAAGGATTAACAGATGCTTAGAGGAAGGGGCAGAAGAGTTTTTCTTGAAGCCTGTGAGGCTGTCAGATTTGAACAAGCTTAAACCCCATATGAAGAAAACCAAGTTGAAAGATCAAAAGCAAGGAACAGAAGATAAACTTGATAACTCAGAAGTTCAACAGCTTCAACCACAACAACAAATCCAAAATGACCTGCAAGAAGCACCAAAACCCCAAGATCCTCAGCCAGAGTCAGAGTCACATTTAGAACAGCCGCAACAATCACTACAACAAGCCAATAACAAGAGGAAGACCATAGAACAGGGTCTTTCACCTGAGACTGACAGAACAAGACCAAGATACAGTGGCATAGCTACTGTGGTATGA 633 0.4171 MNHVFSMAVTTVDSGSKALEFLGLNENDESNPSTPSVSPNNHHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGAEEFFLKPVRLSDLNKLKPHMKKTKLKDQKQGTEDKLDNSEVQQLQPQQQIQNDLQEAPKPQDPQPESESHLEQPQQSLQQANNKRKTIEQGLSPETDRTRPRYSGIATVV 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01897 210 SUPERFAMILY CheY-like 9 115 IPR011006 -
Cca03g01897 210 CDD REC_typeA_ARR 9 116 - -
Cca03g01897 210 Coils Coil 122 142 - -
Cca03g01897 210 ProSiteProfiles Response regulatory domain profile. 1 121 IPR001789 GO:0000160
Cca03g01897 210 SMART REC_2 7 117 IPR001789 GO:0000160
Cca03g01897 210 Pfam Response regulator receiver domain 42 115 IPR001789 GO:0000160
Cca03g01897 210 MobiDBLite consensus disorder prediction 119 210 - -
Cca03g01897 210 MobiDBLite consensus disorder prediction 167 189 - -
Cca03g01897 210 Gene3D - 3 200 - -
Cca03g01897 210 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR9-LIKE 4 206 - -
Cca03g01897 210 MobiDBLite consensus disorder prediction 137 158 - -
Cca03g01897 210 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 206 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01897 Cca-Chr3 38516789 38519032 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01897 6 210 Response Regulator Gene Family AT3G57040 57.273 1.00e-77 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca03g01897 Response_reg 2.8e-15 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01897 K14492 - gmx:100814494 313.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01897 03 38516789 38519032 Cca03g01897 03 38516789 38519032 ECH