Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01885 atGTCCCTTGAAGAGTCGCTAAGATCTCTATCGCTGGATTACCTGAACCTCCTCATCAACGGGCAGGCCTTCAGCGACGTCACTTTCAGCGTGGAGGGACGTCTGGTTCACGCGCACCGCTGCATGCTGGCCGCGCGGAGCCTCTTCTTCAGGAAATTCTTCTGTGGGCCGGACCCACCCTCTGGCCTGGACCCCACCGGCCCAAGGATCAACTCGCGCTCCGGAGTCATACCCGTCAACTCCGTCGGCTACGAGGTCTTCCTCCTCATGCTCCAGTTTCTCTACAGTGGCCAGGTCTCTATCGTTCCCCAGAAGCACGAGGCCCGCCCCAATTGCGGCGAGCGTGGCTGCTGGCACACGCATTGCACCTCCGCCGTTGATCTCGCCCTCGACACCCTCGCTGCCGCTAGATACTTCGGCGTCGAACAGCTCGCATTGCTCACTCAGAAACAATTGGCGAGCATGGTAGAGAAGGCTTCGATCGAGGATGTAATGAAGGTGCTGTTGGCATCTCGGAAGCAAGACATGCAGCAGCTATGGGCCACTTGTCCTCACCCGGTGCCAAAACCGTGTCCCCCTCCGGAGGTTCCCGCCAAGCACCTCCCCATAGACATCGTGGCAAAGATCGAAGAGCTTCGGCTGAAATCCTCCCTGGCGCGCCGCTCCTTAGTGCCGcaccaccaccaccaccaccatcacGCCGCTCTCGACCTCGAGGACCAGAAAATCCGCCGCATGAGGCGGGCCCTCGACTCCTCCGACGTTGAACTGGTGAAGCTCATGGTAATGGGAGAAGGCCTCAACCTGGACGAAGCACTGGCCTTACCCTACGCGGTTGAGAATTGCAGCAGGGAAGTGGTGAAGGCCTTGCTTGAACTCGGCGCAGCCGACGTGAACTACCCCTCCGGCCCCGCCGGGAAGACGCCGCTCCACATTGCGGCGGAGATGGTGTCGCCGGACATGGTGGCGGTGCTTCTGGACCACCACGCGGACCCCAATGTGAGAACCGTGGATGGGGTCACACCTTTGGACATCCTCAGAACCCTAACCTCGGATTTCCTCTTCAAGGGGGCTGTCCCGGGTTTGTCCCACATCGAGCCCAACAAGCTGAGGCTGTGCTTGGAGCTTGTTCAATCCGCGGCTCTTGTGATGTCGCGAGAAGAAGGCAATGCCAACAACAACAACAATGCTCCTTCTTCCGCGGCACCCATCTACCCTCCACCTATGAACGAGGaccacaacagcagtagcagcagcggcaacaacaacaacaTTGGTAACCTCAACTTGGATTCAAGGTTGGTGTATCTCAACCTCGGCGCCACCGCTCCAATGAGTTCCAGGTTGGACAGTGGTGAGGACGAGAGAGAAGCCATGAACACAACCATGTaccaccaccaccaccatcaccacTCTCATGACTTCTAG 1428 0.5532 MSLEESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCMLAARSLFFRKFFCGPDPPSGLDPTGPRINSRSGVIPVNSVGYEVFLLMLQFLYSGQVSIVPQKHEARPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIEDVMKVLLASRKQDMQQLWATCPHPVPKPCPPPEVPAKHLPIDIVAKIEELRLKSSLARRSLVPHHHHHHHHAALDLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALPYAVENCSREVVKALLELGAADVNYPSGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLSHIEPNKLRLCLELVQSAALVMSREEGNANNNNNAPSSAAPIYPPPMNEDHNSSSSSGNNNNIGNLNLDSRLVYLNLGATAPMSSRLDSGEDEREAMNTTMYHHHHHHHSHDF 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01885 475 Gene3D Potassium Channel Kv1.1; Chain A 3 187 IPR011333 -
Cca03g01885 475 PANTHER REGULATORY PROTEIN NPR5 1 468 - -
Cca03g01885 475 Gene3D - 231 353 IPR036770 -
Cca03g01885 475 ProSiteProfiles BTB domain profile. 25 103 IPR000210 GO:0005515
Cca03g01885 475 SUPERFAMILY POZ domain 9 154 IPR011333 -
Cca03g01885 475 SUPERFAMILY Ankyrin repeat 264 348 IPR036770 -
Cca03g01885 475 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 468 IPR044284 GO:0099402
Cca03g01885 475 CDD BTB_POZ_NPR_plant 8 156 - -
Cca03g01885 475 Pfam BTB/POZ domain 16 105 IPR000210 GO:0005515
Cca03g01885 475 Pfam Domain of unknown function (DUF3420) 198 247 IPR024228 -
Cca03g01885 475 MobiDBLite consensus disorder prediction 410 425 - -
Cca03g01885 475 ProSiteProfiles Ankyrin repeat profile. 305 337 IPR002110 GO:0005515
Cca03g01885 475 SMART ANK_2a 305 334 IPR002110 GO:0005515
Cca03g01885 475 SMART ANK_2a 270 300 IPR002110 GO:0005515
Cca03g01885 475 ProSiteProfiles Ankyrin repeat region circular profile. 305 335 - -
Cca03g01885 475 MobiDBLite consensus disorder prediction 389 425 - -
Cca03g01885 475 SMART BTB_4 25 156 IPR000210 GO:0005515
Cca03g01885 475 Pfam Ankyrin repeats (3 copies) 253 335 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01885 Cca-Chr3 38387452 38390438 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Cca03g01885 Ank_2 5.6e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01885 K14508 - gmx:100816086 765.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01885 03 38387452 38390438 Cca03g01885 03 38387452 38390438 ECH
Cca03g01885 03 38387452 38390438 Cca02g00345 02 7126505 7131914 PCT