Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01881 ATGGCTAACAACGAGAACAAGGAAAGAGACTCTGAGGATTACTTGGATCAGATCAATGAGGAAGCTAACGAAGACGAACAAGACATAGAAGCTGTCCAGTACCATAGTGATAGTAGTCATGACAATGAGGGGAATCGTAAAACACGACCTCATTCTTTCTCTTCTCAGATATGGCCTCAAAGTTACAGAGAAGCCACTGATTCTTACACTATTTCTGCTGCTCCAAATCTTGGATCAATTCTACGAGCACCGAGTGTTATTTATTCAAGCTTTGTGGGTGGTTCAAAGAGTTACTTAAACTTAGAACACGATCACGATGAAAAGACTTCTTTTTTATCTGGTGAGGAACTCACTCAAGGAGGGATGTCAAGAAGACAATCAACATGGTGGGAGAAAACTTCAATTCAAATGCAAATTCCTGAAGAATTACCTATTGGTTATGGATGTAGCTTCACTCAAACAATATTCAATGGGATTAATGTGATGGCTGGAGTTGGACTTCTATCAACACCTTATACAATTAAACAAGCTGGATGGGCGAGTATGGGTGTGATGCTTTTTTTTGCAGTTATATGTTGTTATACAGCAGACCTTATGAGACACTGCTTTGAAAGCAGAGAAGGGATCATTAGCTACCCAGACATAGGAGAAGCTGCATTTGGAAAATATGGTCGACTTATTGTATCAGTAAGCATTTTTCTCTTTTCACGAATGCAGTCATATTGTGTGGAGTTTATCATCTTGGAAGGAGATAACCTCACCGAGCTGTTTCCTGGAACATCCTTGAGCTGGGGCAGTTTCCAGCTGGACTCCAAACACTTGTTTGGAATTTTGACTGCACTTATTATTCTCCCAACAGTTTGGTTGAGGGATCTTCGCATAATCTCATATCTCTCAGCTGGAGGGGTTGTTGCTACAGCATTGATTATTATGTGTGTGTTTTACATTGGGACAACAGATGCTGTTGGATTCCATCACAATGGTCCATTGGTGAATTGGAGTGGCCTTCCCTTTGCTTTTGGTATCTTTGGTTTTTGCTTCGCAGGACATTCAGTTTTTCCAAATATTTATCAGTCTATGGCTAACAAAAGAGAATTTACCAGGGCAGTGATTGCAATTTTTATTTTATGCTTGATTATATATGGAAGCGCTGCAATCATGGGATTTCTCATGTTTGGTGAAGGGATTTTGTCTCAAATAACATTGAATCTCCCACAAAATGCATTTGCTTCCAAAATTGCCTTGTGGACAATAGAGTTGTTGCCTGATAGCATTTCAAGTACTTATTGGTGTTTCATTACTATTAGAACTGTACTGGTTATATCTACAGTTTGTGCTGCTTTTCTTATTCCATTTTTTGGGCTTGTGATGGCTTTAATTGGTTCTCTCCTCAGCGTACTAGTGGCAGTGATATTACCAGCTTTATGTTTTCTGAAAATTGTGGGGAAAAATGCAACAAGCACACAGGTTACCATTAGCGTCGCAATTGTGGCATGCGGAGTCACTAGTGCTATGATTGGAACATATTCATCTGTATCAAAAATTGTGCAGACTACACAGAGTCAGTGA 1569 0.3958 MANNENKERDSEDYLDQINEEANEDEQDIEAVQYHSDSSHDNEGNRKTRPHSFSSQIWPQSYREATDSYTISAAPNLGSILRAPSVIYSSFVGGSKSYLNLEHDHDEKTSFLSGEELTQGGMSRRQSTWWEKTSIQMQIPEELPIGYGCSFTQTIFNGINVMAGVGLLSTPYTIKQAGWASMGVMLFFAVICCYTADLMRHCFESREGIISYPDIGEAAFGKYGRLIVSVSIFLFSRMQSYCVEFIILEGDNLTELFPGTSLSWGSFQLDSKHLFGILTALIILPTVWLRDLRIISYLSAGGVVATALIIMCVFYIGTTDAVGFHHNGPLVNWSGLPFAFGIFGFCFAGHSVFPNIYQSMANKREFTRAVIAIFILCLIIYGSAAIMGFLMFGEGILSQITLNLPQNAFASKIALWTIELLPDSISSTYWCFITIRTVLVISTVCAAFLIPFFGLVMALIGSLLSVLVAVILPALCFLKIVGKNATSTQVTISVAIVACGVTSAMIGTYSSVSKIVQTTQSQ 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01881 522 PANTHER AMINO ACID TRANSPORTER AVT1A 31 517 - -
Cca03g01881 522 MobiDBLite consensus disorder prediction 1 16 - -
Cca03g01881 522 Pfam Transmembrane amino acid transporter protein 150 413 IPR013057 -
Cca03g01881 522 Pfam Transmembrane amino acid transporter protein 430 511 IPR013057 -
Cca03g01881 522 PANTHER OS05G0424000 PROTEIN-RELATED 31 517 - -
Cca03g01881 522 Coils Coil 4 35 - -
Cca03g01881 522 MobiDBLite consensus disorder prediction 1 55 - -
Cca03g01881 522 MobiDBLite consensus disorder prediction 28 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01881 Cca-Chr3 38252033 38257320 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01881 53 454 Amino Acid or Auxin Permease AAAP Family AT2G41190 60.377 8.25e-178 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01881 K15015 - gmx:100790344 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01881 03 38252033 38257320 Cca03g01881 03 38252033 38257320 ECH