Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01879 ATGGGTAGCAGAAGTAGAACTGTAAACGTTAACACTAAAGACACCAACAAGGTTGTGAACGGGATGCCAAGCTACGCTCCTTCCTTGCCTTCTTCTAGTTCCATGGGCATAGAAGCAACTAATGTTCATCCTTCCCGAATTTCTGAATTTGGAACCCTGGAGCAATCTCTTGGATTTCGTGTTGAGGATACCATTAATCTTAGCAGAAATCCGGTGTTTAATCAAATGAAATCAAATAGCCAAGCTCTAGGTGCTGATATTCAATTTGGTGCTTTAAATAAGTCAATTGCGACATCAGATATAAACCTCTCCGCTGCTATTGGTGGGTCTCAGCCATTGCCATTACAGATACTAAAAGATTCACAACCAACTCTGGCTTCAACATCTGCCGGTAATCGTGAGAACTGGGGAGAGACCAACATGGCTGATGCCAGCCCCAGGACTGATACTTCAACAGATGATACAGAAGACAAAAATCCAAGGCCTGAAAGGGGTGAATCCAGTGATAGATCAAAAGATAAATCAGATCAAAAGACATTAAGACGGCTTGCTCAAAACCGTGAGGCTGCTAGGAAAAGTCGACTGAGGAAAAAGGCATATGTGCAACAACTAGAGAGCAGTAGGCTGAAACTGACCCAACTTGAGCAGGAGCTCCAGCGAGCTCGCCAGCAGGGAATATTTATTTCAAGCACTGGAGATCAGGCCCAGTCAATGAGTGGAAATGGTGCTATGGCATTTGATGTTGAGTACGCACGATGGTTAGAAGAGCATAATAGACAAACCAATGAGCTAAGGGCTGCAATAAATTCTCATGCTGGAGATATTGAACTTCGAACCATTGTTGACAATTTCATGACGCAATTTGATGATATCTTCAGGCTGAAAGGTATTGCAGCAAAAGCTGATGTTTTCCACATCCTGTCAGGAATGTGGAAGACTCCAGCTGAGAGATGTTTCATGTGGATTGGAGGCTTTCGCTCATCTGAACTCCTCAAGCTTCTTGTAAGTCAGTTGGAGCCTTTAACTGAGCAACAATTGATGGGCATCTACAACTTGCAGCAGTCTTCCCAGCAGGCCGAAGATGCTCTTTCTCAAGGAATGGATGCACTGCAGCAATCACTGTCTGAGACATTGGCTAATGGTTCACCCAACTCATCAGGCTCCTCGGGGAATGTGGCAAATTACATGGGCCAAATGGCTATGGCCATGGGAAAGCTTGGTACTCTTGAGGGGTTTCTTCGACAGGCTGACAACCTGCGGCAGCAAACATTACAACAAATGCTTCGGATATTAACAACCAGGCAATCGGCTCGAGCTCTTCTTGCAATCAGTGATTATTTCTCGCGTCTGCGAGCATTGAGTTCTCTGTGGCTGGCCAGGCCAAGGGAGTGA 1392 0.4533 MGSRSRTVNVNTKDTNKVVNGMPSYAPSLPSSSSMGIEATNVHPSRISEFGTLEQSLGFRVEDTINLSRNPVFNQMKSNSQALGADIQFGALNKSIATSDINLSAAIGGSQPLPLQILKDSQPTLASTSAGNRENWGETNMADASPRTDTSTDDTEDKNPRPERGESSDRSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGDQAQSMSGNGAMAFDVEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMTQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVSQLEPLTEQQLMGIYNLQQSSQQAEDALSQGMDALQQSLSETLANGSPNSSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01879 463 SMART brlzneu 174 237 IPR004827 GO:0003700|GO:0006355
Cca03g01879 463 SUPERFAMILY Leucine zipper domain 178 221 IPR046347 GO:0003700|GO:0006355
Cca03g01879 463 Pfam Seed dormancy control 261 336 IPR025422 GO:0006351|GO:0043565
Cca03g01879 463 Coils Coil 197 224 - -
Cca03g01879 463 MobiDBLite consensus disorder prediction 1 37 - -
Cca03g01879 463 CDD bZIP_HBP1b-like 178 230 - -
Cca03g01879 463 ProSiteProfiles DOG1 domain profile. 243 460 IPR025422 GO:0006351|GO:0043565
Cca03g01879 463 MobiDBLite consensus disorder prediction 124 148 - -
Cca03g01879 463 MobiDBLite consensus disorder prediction 124 180 - -
Cca03g01879 463 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 176 220 IPR004827 GO:0003700|GO:0006355
Cca03g01879 463 Pfam Basic region leucine zipper 174 220 IPR004827 GO:0003700|GO:0006355
Cca03g01879 463 PANTHER TRANSCRIPTION FACTOR TGA9 61 463 - -
Cca03g01879 463 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 181 196 IPR004827 GO:0003700|GO:0006355
Cca03g01879 463 Gene3D - 177 229 - -
Cca03g01879 463 PANTHER TGACG-SEQUENCE-SPECIFIC DNA-BINDING PROTEIN TGA-2.1 61 463 - -
Cca03g01879 463 MobiDBLite consensus disorder prediction 149 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01879 Cca-Chr3 38161534 38167885 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01879 141 463 bZIP Transcription Factor Family AT3G12250 75.227 4.05e-175 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Cca03g01879 DOG1 8.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01879 K14431 - gmx:778136 789.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01879 03 38161534 38167885 Cca03g01879 03 38161534 38167885 ECH