Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01868 ATGCCTTACCCGGTCCGAGAGAACCTCTCGATCGGCAACATCGGTGACGCGGCGGAGATTCTCCAAAACGGCACCGTCCAAAGCGTCACGCACAtcctctccgtcctcagctccgcctccatctccttctTCTCCGAATGGCGCCCCGGCCTCTCCATCCCCGCCAAGGACATCACCAAAGTTCACGTCGCCGACTCCGCCGCCGCCAAATCGGCTCTCTCGCCGGAGAAGCTCCTCTACTCTCTCGAGTACGCCGGCCGCGACCTGAAGCTCGTGAGGATGGCCGTCCCTCTCAAAGACACCGAGAACGAGGACTTGCTCGATTACTTGGAGGTTTGCATCGACTTCATTGATCGCGGTCGGAAGGAAGGTTCCGTTCTGGTTCACTGTTTCGCCGGAGTTTCCAGAAGTGCGGCGGTTATTACGGCGTACTTGATGAGGACGGAACGTCTATCTGTAGAAGATGCCCTTGAATCGTTGAGGCAGAGCTGTGAATTTGTTTGTCCCAATGATGGATTTCTAGAGCAGTTGAAAATGTTTGAGGCGATGGGTTTCAAGGTTGATCACTTCAGCCCTATATACAAGCGCTTTCGCCTAAAAATACTAGGTGAGAATCATTTCTCAGGGTTGAGGATAGACAGTTCTAAACTTGGTGCTGATCCTGGCATGCCTGTCGAAATTTCTTCAGAGGCAGAAGAAACTACTAAAACAGTAAATAACCGTAGTCCTACGTATCGTTGTAAGAAGTGCCGGCGACTTGTTGCATTGCAAGAACATGTCATAGATCATGTTCCTGGTGAGGGTGAGACAGCCTTTGAGTGGCACAAACGGAGAAGTGGCAACCCTTTCAATAAATCTAACGAATCTGAGTGTTCATCCATATTTATTGAGCCTCTAAAATGGATGAAAGCTGTTGAGGAAGGTGCATTGGAAGGAAAGCTGTCCTGTGCTCATTGCGATGCCCGTTTGGGATACTTCACTTGGGCGGGCATACAATGCAGCTGCGGAAGCTGGATAACCCCAGCCTTTCAACTCCACAAAAGCCGGATAGACATAAGCCCAATATAA 1068 0.4869 MPYPVRENLSIGNIGDAAEILQNGTVQSVTHILSVLSSASISFFSEWRPGLSIPAKDITKVHVADSAAAKSALSPEKLLYSLEYAGRDLKLVRMAVPLKDTENEDLLDYLEVCIDFIDRGRKEGSVLVHCFAGVSRSAAVITAYLMRTERLSVEDALESLRQSCEFVCPNDGFLEQLKMFEAMGFKVDHFSPIYKRFRLKILGENHFSGLRIDSSKLGADPGMPVEISSEAEETTKTVNNRSPTYRCKKCRRLVALQEHVIDHVPGEGETAFEWHKRRSGNPFNKSNESECSSIFIEPLKWMKAVEEGALEGKLSCAHCDARLGYFTWAGIQCSCGSWITPAFQLHKSRIDISPI 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01868 355 Pfam Dual specificity phosphatase, catalytic domain 92 181 IPR000340 GO:0008138|GO:0016311
Cca03g01868 355 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER 1 351 - -
Cca03g01868 355 ProSiteProfiles Dual specificity protein phosphatase domain profile. 1 186 IPR020422 GO:0006470|GO:0008138
Cca03g01868 355 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 87 197 IPR029021 -
Cca03g01868 355 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 104 162 IPR000387 GO:0016311|GO:0016791
Cca03g01868 355 Gene3D Protein tyrosine phosphatase superfamily 4 203 IPR029021 -
Cca03g01868 355 CDD DSP_DUSP12 4 188 - -
Cca03g01868 355 SMART dsp_5 1 183 IPR020422 GO:0006470|GO:0008138
Cca03g01868 355 ProSitePatterns Tyrosine specific protein phosphatases active site. 128 138 IPR016130 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01868 Cca-Chr3 38050190 38053614 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01868 44 181 Protein tyrosine phosphatase (PTP) family AT3G06110 32.215 6.89e-16 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01868 K14819 - gmx:100804683 644.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01868 03 38050190 38053614 Cca03g01868 03 38050190 38053614 ECH