Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01864 ATGATGCACCACTTTGCTATGGACAACTCTCAGCATCAGCATCAGCATCTCCTCCAATTCTTCCACACCACCCCCTTCTTCCAATCTCCCCCCCACACCACCACCTCCCACCAATTGCAAGACAGAGCCCTGGCTGCCATGAACAACCACAAGGAAGCTGAGAAAAGAAGGAGGGAGAGAATCAACTCCCACCTCGACCACCTCCGCACTCTTCTCCCTTGCAATTCCAAGACAGACAAAGCTTCGCTTCTCGCCAAGGTTGTCCAGCGAGTCAAGGAGCTCAAACAGCAAACCTCCCAAATCACTGACCTCGAGACGGTTCCCTCGGAGACCGACGAGATCACCGTGCTCTCCACCGGCACCGACTACGAAGCCGGCGGCGAAGGGAGGCTCATATTCAAAGCCTCTCTCTGCTGCGAGGACCGCTCCGACCTCATCCCGGACCTCATAGAAATCCTGAACTCGCTTCACCTCAAAACCCTCAAAGCGGAAATGGCCACGCTCGGAGGAAGAACGCGCAACGTTCTCGTCGTGGCTGCTGATAAAGAACACAGCATCGAGTCCATTCATTTCCTTCAGAACTCCCTCAAGTCCTTGCTAGACCGTTCCACTCCAACTGACAGGTCAAAACGACGCCGTGGCCTAGACCGAAGACTAATGCCTTTAACATGA 672 0.5432 MMHHFAMDNSQHQHQHLLQFFHTTPFFQSPPHTTTSHQLQDRALAAMNNHKEAEKRRRERINSHLDHLRTLLPCNSKTDKASLLAKVVQRVKELKQQTSQITDLETVPSETDEITVLSTGTDYEAGGEGRLIFKASLCCEDRSDLIPDLIEILNSLHLKTLKAEMATLGGRTRNVLVVAADKEHSIESIHFLQNSLKSLLDRSTPTDRSKRRRGLDRRLMPLT 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01864 223 PANTHER TRANSCRIPTION FACTOR BHLH30 3 219 IPR045847 GO:0003700|GO:0006355
Cca03g01864 223 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 3 219 - -
Cca03g01864 223 Gene3D - 40 106 IPR036638 GO:0046983
Cca03g01864 223 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 103 IPR036638 GO:0046983
Cca03g01864 223 Coils Coil 36 56 - -
Cca03g01864 223 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 94 IPR011598 GO:0046983
Cca03g01864 223 Pfam Helix-loop-helix DNA-binding domain 49 94 IPR011598 GO:0046983
Cca03g01864 223 SMART finulus 51 100 IPR011598 GO:0046983
Cca03g01864 223 CDD bHLH_AtAIG1_like 40 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01864 Cca-Chr3 37986688 37987959 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01864 40 206 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 71.176 1.57e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca03g01864 HLH 1.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01864 - K22484 pvu:PHAVU_001G121200g 334.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01864 03 37986688 37987959 Cca03g01864 03 37986688 37987959 ECH