Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01844 ATGGAGACACGCGCCGCCGCAAAGAGAAGAGCCAACCAATCCCTTAATCAATCCCTTAAGAAACAGCGGATTGTATTGGCCGATCTTTCTAATTTCCCCAATCTCATCGATCCTCAACCCAAATGTGTGACAAGATCACGTGTCACCAAGAAGAAAATTTCCTCGGCAAGCAAAACAGTTGACAACAATGATGCAGAATCAAACATCAATGGTGCTTTTGTTTCTGATATTTACAATTATCTTCGTACTCTCGAGACGGAGAAGAAGCGAAGACCTAGGGTTGATTACATTGAGAAGGTTCAGAATGAGGTTACAATAAGTATGAGAGGAATATTAGTAGATTGGTTAGTAGAGGTTGCAGAGGAGTATAAGCTTCTCTCTGATACTCTTCATCTCTCTGTTTCCTATATCGATAGGGTTTTGTCTTTTAATGCTGTGAGCAAACCGAGGCTTCAGCTGCTGGGTGTTTCGTCTATGCTTATTGCATCGAAGTATGAGGAGATCAGCCCGCCGCATGTGGAAGAATTCTGCTTTATCACTGACAACACGTATGACAAGGCAGAGGTGATAAGTATGGAAGGGGAGATACTCAAGGCCTTGGATTTTGAAATGGGTAACCCCACTGTTAAGACCTTTCTAAGGAGGTTTACTGGAATTGCTTGTGAGAATAAAAAGGCTTCGAGTTTGCAATTTGAGTTTATGAGTTATTATCTTGCCGAGCTAAGTTTGTTGGAGTATTATTGTCTGAAGTTCTTACCTTCTTTGGTGGCTGCCTCGGTTGTATTTCTTGCTAGATTTATCATTTGGCCCGATCTGCAACCTTGGACTCCGGCCCTGTATGAATGCTCTCGGTATAAATCAATTGAGTTAAAGGAGTGTGTCCTCATCTTACATGACTTGTACATGGCAAGGAGGGGAGGGTCTTTCCAAGCTATTCGGCAGAAATACAGGCAGCACAAGTTTAAGTATGTAGCAAACGTGCCAGCGCCACCACTTTTACCTAATTATCTATTTGAAGAATGA 1023 0.4233 METRAAAKRRANQSLNQSLKKQRIVLADLSNFPNLIDPQPKCVTRSRVTKKKISSASKTVDNNDAESNINGAFVSDIYNYLRTLETEKKRRPRVDYIEKVQNEVTISMRGILVDWLVEVAEEYKLLSDTLHLSVSYIDRVLSFNAVSKPRLQLLGVSSMLIASKYEEISPPHVEEFCFITDNTYDKAEVISMEGEILKALDFEMGNPTVKTFLRRFTGIACENKKASSLQFEFMSYYLAELSLLEYYCLKFLPSLVAASVVFLARFIIWPDLQPWTPALYECSRYKSIELKECVLILHDLYMARRGGSFQAIRQKYRQHKFKYVANVPAPPLLPNYLFEE 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01844 340 SMART Cyclin_C_2 207 330 IPR004367 -
Cca03g01844 340 Pfam Cyclin, N-terminal domain 76 204 IPR006671 -
Cca03g01844 340 Gene3D - 76 326 - -
Cca03g01844 340 SMART cyclin_7 211 299 IPR013763 -
Cca03g01844 340 SMART cyclin_7 114 198 IPR013763 -
Cca03g01844 340 CDD CYCLIN 108 197 IPR013763 -
Cca03g01844 340 PANTHER CYCLIN-A3-1-RELATED 19 339 - -
Cca03g01844 340 CDD CYCLIN 207 298 IPR013763 -
Cca03g01844 340 SUPERFAMILY Cyclin-like 72 204 IPR036915 -
Cca03g01844 340 ProSitePatterns Cyclins signature. 109 140 IPR006671 -
Cca03g01844 340 Pfam Cyclin, C-terminal domain 207 329 IPR004367 -
Cca03g01844 340 Gene3D - 90 205 - -
Cca03g01844 340 PANTHER CYCLINS 19 339 IPR039361 -
Cca03g01844 340 PIRSF Cyclin_A_B_D_E 2 337 IPR039361 -
Cca03g01844 340 SUPERFAMILY Cyclin-like 207 332 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01844 Cca-Chr3 37775779 37779092 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01844 3 340 Core Cell Cycle Gene Families AT5G43080 54.651 2.29e-128 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01844 K06627 - gmx:100776007 510.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01844 03 37775779 37779092 Cca03g01844 03 37775779 37779092 ECH