Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01839 ATGAGCGCTCCGTCGCGAgaagaggcgtcgaaggaggagagggaggaggaggaggaggaggggaACCGGCTTCTAGTTGTAGAGGATGAAGAAGGGTTGGAGGTGGCATACGAAGCGGGGGAGAAGATCCTGGTGACGGATTTCGAGTTCGACTCCATCGACGATTCCACTGTCCCTCCCTTCTCCTGGAACAAGCTCTGGCTCTTCACTGGGCCTGGCTTCTTGATGAGCATAGCGTTTTTGGATCCGGGGAATCTCGAGGGGGATCTCCAGGCCGGGGCCATCGCCGGCTACTCCCTCCTCTGGCTCTTGATGTGGGCCACCTTCATGGGCCTCTTGATCCAGCTTCTATCCGCCAGGCTCGGTGTCGCCACGGGCCGCCACCTCGCCGAGCTTTGCAAGGACGAGTATCCCAATTGGGCCCGCCTCCTGCTTTGGTTCATGGCCGAGCTGGCCCTCATTGGCGCCGACATTCAAGAGGTTATTGGAAGTGCCATCGCCATTCAAATTCTTAGCCGCGGCTTCTTCCCTCTCTGGGCTGGAGTTCTAATTACTGCTTCCGATTGCTTCTTCTTTCTGTTTCTTGAGAACTATGGAGTGAGGAAGTTGGAAGCTGCTTTTGCAGTTCTCATCGCTACTATGGCTCTTTCTTTCGCCTGGATGTTTGGTGATGCAAAACCTAATGGAAAAGAGCTTTTGATGGGTATTTTGCTTCCAAGACTAAGCTCAAAAACAATTCGACAGGCTGTGGGTGTTGTAGGTTGTGTCATTATGCCTCACAATGTATTTCTGCATTCTGCTTTGGTGCAGTCAAGGAAGGTTGACCCCAATAAGAAAGGTCGGGTACAGGAGGCTATCAACTACTATTCAATTGAGTCATCGGCTGCACTTTCAGTCTCCTTCATGATCAATTTATTTGTAACAACCGTTTTTGCTAAGGGTTTTTATGGAACAAAGCAAGCAAATAGCATAGGATTGGTCAATGCAGGGCAGTATCTTGAAGAAAAATATGGAGGAGGAGCCTTCCCTATTCTTTATATATGGGGAATTGGGTTATTGGCAGCTGGGCAGAGTAGCACCATCACTGGCACATATGCTGGTCAATTCATAATGGGGGGTTTCCTTGACCTTCGTTTAAAGAAATGGTTGAGAGCATTGATCACTAGAAGTTTTGCAATTGTGCCAACTATAATTGTAGCCGTTGTTTTCAATAGATCAGAAGCTTCATTGGATGTTTTGAATGAATGGCTCAATGTGCTTCAGTCCATGCAAATTCCCTTTGCTCTGATTCCCCTCCTCACCTTGGTCTCCAAAGAGCATATAATGGGAACCTTTAGGGTTGGGCCTATTCTTGAGAGAGTGGCATGGACTGTTGCTGGACTGATAATAGTAATTAATGGCTATCTCTTGTTAGATTTCTTCCTTTCTGAGGTGAATGGCGTGCTGCTTGGTCTTTTAGCCTGCTCCAGCACAGTAGCCTATGTTGCATTCATTGTATATTTGGTTTCACGGAGCGGTGTTCTTCCTTCTTCTTGGGTTAATCGCCTTCCCAAGGGATTTTCTTCTACTGGGAACTAA 1578 0.4632 MSAPSREEASKEEREEEEEEGNRLLVVEDEEGLEVAYEAGEKILVTDFEFDSIDDSTVPPFSWNKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATFMGLLIQLLSARLGVATGRHLAELCKDEYPNWARLLLWFMAELALIGADIQEVIGSAIAIQILSRGFFPLWAGVLITASDCFFFLFLENYGVRKLEAAFAVLIATMALSFAWMFGDAKPNGKELLMGILLPRLSSKTIRQAVGVVGCVIMPHNVFLHSALVQSRKVDPNKKGRVQEAINYYSIESSAALSVSFMINLFVTTVFAKGFYGTKQANSIGLVNAGQYLEEKYGGGAFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLDLRLKKWLRALITRSFAIVPTIIVAVVFNRSEASLDVLNEWLNVLQSMQIPFALIPLLTLVSKEHIMGTFRVGPILERVAWTVAGLIIVINGYLLLDFFLSEVNGVLLGLLACSSTVAYVAFIVYLVSRSGVLPSSWVNRLPKGFSSTGN 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01839 525 MobiDBLite consensus disorder prediction 1 24 - -
Cca03g01839 525 PANTHER BNAC08G04640D PROTEIN 26 514 - -
Cca03g01839 525 Pfam Natural resistance-associated macrophage protein 87 448 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca03g01839 525 PRINTS Natural resistance-associated macrophage protein signature 145 171 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca03g01839 525 PRINTS Natural resistance-associated macrophage protein signature 175 194 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca03g01839 525 PRINTS Natural resistance-associated macrophage protein signature 200 221 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca03g01839 525 PRINTS Natural resistance-associated macrophage protein signature 249 272 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca03g01839 525 PRINTS Natural resistance-associated macrophage protein signature 356 375 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca03g01839 525 PRINTS Natural resistance-associated macrophage protein signature 384 401 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca03g01839 525 PRINTS Natural resistance-associated macrophage protein signature 418 437 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca03g01839 525 Hamap Divalent metal cation transporter MntH [mntH]. 53 474 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca03g01839 525 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 26 514 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca03g01839 525 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 65 442 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01839 Cca-Chr3 37736892 37740945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01839 7 505 Inorganic Solute Cotransporters AT1G47240 79.175 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01839 K21398 - gmx:100795013 909.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01839 03 37736892 37740945 Cca03g01839 03 37736892 37740945 ECH